Table 1. Interaction Energies and Average Distances Measured with Molecular Dynamics Simulationsa.
MD simulation data | RSL-wt | RSL[4FW] | RSL[5FW] | RSL[7FW] |
---|---|---|---|---|
ΔG(TOT)calcb | –11.2 | –10.2 | –10.2 | –11.2 |
(ΔGexp)c | (−8.1) | (−7.9) | (−8.3) | (−8.1) |
ΔG(Trp31)calc | –5.0 | –4.4 | –4.7 | –4.4 |
ΔG(Trp36)calc | –3.5 | –3.6 | –3.6 | –3.8 |
d(H5···Trp31.CZ2)d | 2.84 ± 0.25 | 2.94 ± 0.32 | 2.85 ± 0.27 | 2.93 ± 0.29 |
d(O3···Trp36.NHE1)d | 1.95 ± 0.14 | 1.95 ± 0.14 | 1.95 ± 0.15 | 1.92 ± 0.14 |
d(HO4···Glu73.OE2)d | 1.80 ± 0.19 | 1.78 ± 0.17 | 1.78 ± 0.18 | 1.94 ± 0.32 |
All energies are in kcal mol–1.
Calculated binding free energies.
Data measured by ITC in this work.
Distances in Å; time-averaged values and standard deviations were computed over all binding sites of each trimer.