TABLE 2.
Metagenome-wide association and KEGG enrichment analysis show that bacterial pathways significantly influence D. melanogaster SR
| Identifier | Relevant characteristics (strain name; resistance; PMID or accession no.)a | Preferred mediumb | Oxygen conditionsc |
|---|---|---|---|
| 7636 | Escherichia coli BW25113 (CGSC wild type); 10829079, 16738554 | LB | Oxic |
| 8399 | CGSC 7636 ΔspeE739::kan; Kmr; 10829079, 16738554 | LB | Oxic |
| 8422 | CGSC 7636 Δpfs-773::kan; Kmr; 10829079, 16738554 | LB | Oxic |
| 8713 | CGSC 7636 ΔahpC744::kan; Kmr; 10829079, 16738554 | LB | Oxic |
| 9346 | CGSC 7636 ΔspeG732::kan; Kmr; 10829079, 16738554 | LB | Oxic |
| 9386 | CGSC 7636 ΔgstA785::kan; Kmr; 10829079, 16738554 | LB | Oxic |
| 9453 | CGSC 7636 ΔkatE731::kan; Kmr; 10829079, 16738554 | LB | Oxic |
| 9859 | CGSC 7636 ΔpdxB729::kan; Kmr; 10829079, 16738554 | LB | Oxic |
| 9920 | CGSC 7636 ΔpdxK747::kan; Kmr; 10829079, 16738554 | LB | Oxic |
| 10018 | CGSC 7636 ΔglyA725::kan; Kmr; 10829079, 16738554 | LB | Oxic |
| 10100 | CGSC 7636 ΔluxS768::kan; Kmr; 10829079, 16738554 | LB | Oxic |
| 10758 | CGSC 7636 ΔmetE774::kan; Kmr; 10829079, 16738554 | LB | Oxic |
| 10798 | CGSC 7636 ΔsodA768::kan; Kmr; 10829079, 16738554 | LB | Oxic |
| 10826 | CGSC 7636 ΔmetF728::kan; Kmr; 10829079, 16738554 | LB | Oxic |
| 10856 | CGSC 7636 ΔmetA780::kan; Kmr; 10829079, 16738554 | LB | Oxic |
| 10862 | CGSC 7636 ΔmetH786::kan; Kmr; 10829079, 16738554 | LB | Oxic |
| 11994 | CGSC 7636 ΔyjiA750::kan; Kmr; 10829079, 16738554 | LB | Oxic |
| aace | Acetobacter aceti NBRC 14818; BABW00000000 | mMRS | Oxic |
| acew | Acetobacter orientalis DmW_048; JOOY00000000 | mMRS | Oxic |
| aci5 | Acetobacter sp. strain DmW_043; JOMN00000000 | mMRS | Oxic |
| ain2 | Acetobacter indonesiensis DmW_046; JOMP00000000 | mMRS | Oxic |
| amac | Acetobacter malorum DmCS_005; JOJU00000000 | mMRS | Oxic |
| aori | Acetobacter orientalis DmW_045; JOMO00000000 | mMRS | Oxic |
| apa3 | Acetobacter pasteurianus 3P3; CADQ00000000 | mMRS | Oxic |
| apan | Acetobacter pasteurianus NBRC 101655; BACF00000000 | mMRS | Oxic |
| apnb | Acetobacter pasteurianus NBRC 106471 or LMG 1262; PRJDA65547 | mMRS | Oxic |
| apoc | Acetobacter pomorum DmCS_004; JOKL00000000 | mMRS | Oxic |
| atrc | Acetobacter tropicalis DmCS_006; JOKM00000000 | mMRS | Oxic |
| atrn | Acetobacter tropicalis NBRC 101654; BABS00000000 | mMRS | Oxic |
| bsub | Bacillus subtilis subsp. subtilis strain 168; NC_000964.3 | LB | Oxic |
| ecok | Escherichia coli strain K-12 substrain MG1655; NC_000913.3 | LB | Oxic |
| efav | Enterococcus faecalis V583; NC_004668.1 | BHI | Oxic |
| efog | Enterococcus faecalis OG1RF; NC_017316.1 | BHI | Oxic |
| ehor | Enterobacter hormaechei ATCC 49162; AFHR00000000 | LB | Oxic |
| galb | Gluconobacter sp. strain DsW_056; JOPF00000000 | Potato | Oxic |
| ge5p | Gluconacetobacter europaeus 5p3; CADS00000000 | Potato | Oxic |
| gfra | Gluconobacter frateurii NBRC 101659; BADZ00000000 | Potato | Oxic |
| ghan | Gluconacetobacter hansenii ATCC 23769; ADTV01000000 | Potato | Oxic |
| gobo | Gluconacetobacter oboediens 174Bp2; CADT00000000 | Potato | Oxic |
| gxyl | Gluconacetobacter xylinus NBRC 3288; NC_016037.1 | Potato | Oxic |
| lani | Lactobacillus animalis KCTC 3501; AEOF00000000 | mMRS | Microoxic |
| lbga | Lactobacillus brevis subsp. gravesensis ATCC 27305; NZ_ACGG01000000 | mMRS | Microoxic |
| lbrc | Lactobacillus brevis DmCS_003; JOKA00000000 | mMRS | Microoxic |
| lbuc | Lactobacillus buchneri NRRLB-30929; ACGG00000000 | mMRS | Microoxic |
| lfal | Leuconostoc fallax KCTC 3537; AEIZ00000000 | mMRS | Microoxic |
| lfer | Lactobacillus fermentum ATCC 14931; ACGI00000000 | mMRS | Microoxic |
| lfrc | Lactobacillus fructivorans DmCS_002; JOJZ00000000 | mMRS | Microoxic |
| lfrk | Lactobacillus fructivorans KCTC 3543; AEQY00000000 | mMRS | Microoxic |
| llac | Lactococcus lactis BPL1; JRFX00000000 | mMRS | Microoxic |
| lmli | Lactobacillus mali KCTC 3596 = DSM 20444; BACP00000000 | mMRS | Microoxic |
| lplc | Lactobacillus plantarum DmCS_001; JOJT00000000 | mMRS | Microoxic |
| lplw | Lactobacillus plantarum WCFS1; NC_004567.2 | mMRS | Microoxic |
| lrha | Lactobacillus rhamnosus GG; NC_013198.1 | mMRS | Microoxic |
| pbur | Providencia burhodogranariea DSM 19968; AKKL00000000 | LB | Oxic |
a
Kmr, kanamycin resistance.
b
Abbreviations and media are described in Materials and Methods.
c
Solid and liquid conditions for oxic and microoxic conditions are described in Materials and Methods.