TABLE 1.
Details of signature proteins for species with Pfk
| Gene | NCBI annotation | Locus taga | COGb | Presence of the gene in: |
||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| L. delbrueckii | L. alimentarius | L. perolens | L. casei | L. sakei | L. salivarius | L. plantarum | L. coryniformis | L. concavus-L. dextrinicus | L. selangorensis | Pediococcus | ||||
| QTS_863 | 6-Phosphofructokinase | lp_1898 | COG0205G | + | + | + | + | + | + | + | + | + | + | + |
| QTS_569 | Zn-dependent peptidase | lp_2306 | COG0612R | − | + | + | + | + | + | + | + | + | + | + |
| QTS_898 | Cell division inhibitor | lp_2316 | COG0850D | − | + | + | + | + | + | + | + | + | + | − |
| QTS_1754 | Transcription termination factor Rho | lp_0511 | COG1158K | − | − | − | − | − | + | + | + | − | − | + |
| QTS_2490 | Hypothetical protein | LBA0167 | ND | +c | −d | −e | − | − | − | − | − | − | + | − |
| QTS_2524 | Hypothetical protein | LBA0844 | ND | +c | − | − | − | − | − | − | − | − | − | − |
| QTS_2525 | S1 family RNA-binding protein | LBA0276 | COG1098R | + | + | +f | − | − | − | + | − | − | − | −g |
| QTS_3870 | Hypothetical protein | LSEI_1730 | ND | − | − | + | + | − | − | − | + | − | + | − |
| QTS_4397 | Hypothetical protein | LSEI_0696 | ND | − | − | − | + | − | − | − | + | − | + | − |
| QTS_4707 | Hypothetical protein | FC67_GL001143 | ND | − | + | − | − | − | − | − | − | − | − | − |
| Profile | A | B | C | D | E | F | G | H | E | I | L | |||
a
Locus tags lp_1898, lp_2306, lp_2316, and lp_0511 are for Lactobacillus plantarum WCFS1; locus tags LBA0167, LBA0844, and LBA0276 are for Lactobacillus acidophilus NCFM; locus tags LSEI_1730 and LSEI_0696 are for Lactobacillus paracasei ATCC 334; and locus tag FC67_GL001143 is for Lactobacillus alimentarius DSM 20249.
b
COGs are as follows: D, cell cycle control, cell division, and chromosome partitioning; G, carbohydrate transport and metabolism; K, transcription; R, general function prediction only. ND, not determined.
c
Absent in L. floricola.
d
Present in L. mellifer and L. mellis.
e
Present in L. composti.
f
Absent in L. composti.
g
Present in P. claussenii.