TABLE 2.
Details of signature proteins for species without Pfk
| Gene | NCBI annotation | Locus taga | COGb | Presence of the gene in: |
|||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| L. reuteri | L. vaccinostercus | L. fructivorans | L. brevis | L. buchneri | L. collinoides | L. rossiae-L. siliginis | Leuconostocaceae | ||||
| QTS_863 | 6-Phosphofructokinase | lp_1898 | COG0205G | − | − | − | − | − | − | − | − |
| QTS_494 | Thiamine biosynthesis protein Thil | LVIS_RS1765 | COG0301HJ | + | + | + | + | + | + | + | − |
| QTS_497 | tRNA methyltransferase | LVIS_RS18530 | COG0482J | + | + | + | + | + | + | + | − |
| QTS_502 | Transcriptional regulator NrdR | LVIS_RS16605 | COG1327K | + | + | + | + | + | + | + | − |
| QTS_509 | tRNA uridine 5-carboxymethylaminomethyl modification protein | LVIS_RS22810 | COG0445J | + | + | + | + | + | + | + | − |
| QTS_514 | DNA replication initiation control protein YabA | LVIS_RS14505 | COG4467L | + | + | + | + | + | + | + | − |
| QTS_898 | Cell division inhibitor | LVIS_RS17610 | COG0850D | − | − | + | + | + | + | − | − |
| QTS_2490 | Hypothetical protein | LVIS_RS11970 | ND | − | − | − | + | − | − | − | − |
| Profile | A | A | B | C | B | B | A | D | |||
a
Locus tag lp_1898 is for Lactobacillus plantarum WCFS1, and the other locus tags are for Lactobacillus brevis ATCC 367.
b
COGs are as follows: D, cell cycle control, cell division, and chromosome partitioning; G, carbohydrate transport and metabolism; H, coenzyme transport and metabolism; J, translation, ribosomal structure, and biogenesis; K, transcription; L, replication, recombination, and repair; R, general function prediction only. ND, not determined.