TABLE 2.
Examples of genes found in clade-specific regions
| Section | Gene name | Product | Locus |
|---|---|---|---|
| HL clade-specific region | Possible phosphate-binding protein | MED4_665181_665417 | |
| pstC | Phosphate transport system permease protein PstC | MED4_685879_686826 | |
| pstA | Phosphate transport system permease protein PstA | MED4_686833_687726 | |
| pstB | Phosphate transport ATP-binding protein PstB | MED4_687728_688537 | |
| LLI clade-specific region | pstB | Phosphate transport ATP-binding protein PstB | NATL2A_847867_847064 |
| pstA | Phosphate transport system permease protein PstA | NATL2A_848813_847899 | |
| pstC | Phosphate transport system permease protein PstC | NATL2A_849674_848814 | |
| DNA ligase | NATL2A_955315_954713 | ||
| DNA ligase | NATL2A_959226_959912 | ||
| hli11 | HLI protein hli11 | NATL2A_967126_966956 | |
| Ferric siderophore transport system, periplasmic binding protein TonB | NATL2A_1209792_1210433 | ||
| LLI subclade-specific regiona | hli11 | HLI protein hli11 | NATL2A_1052907_1052761 |
| Endonuclease VIII | NATL2A_1060998_1061843 | ||
| LLII/III clade-specific region | Helicase, SNF2/RAD54 family | SS120_49788_46600 | |
| hli | Phage-encoded HLI protein, HliP | SS120_1097431_1097565 | |
| hli | Possible HLI protein | SS120_1097580_1097789 | |
| LLII subclade-specific region | DNA double-strand break repair Rad50 ATPase | SS120_645533_642819 | |
| DNA double-strand break repair protein Mre11 | SS120_646724_645540 | ||
| Possible DNA gyrase/topoisomerase IV, subunit | SS120_647907_647629 | ||
| HL and LLI shared regionb | urtE | Urea ABC transporter, ATPase protein UrtE | NATL2A_1539531_1538824 |
| urtD | Urea ABC transporter, ATPase protein UrtD | NATL2A_1540283_1539531 | |
| urtC | Urea ABC transporter, permease protein UrtC | NATL2A_1541395_1540280 | |
| urtB | Urea ABC transporter, permease protein UrtB | NATL2A_1542556_1541399 | |
| urtB | Urea ABC transporter, substrate binding protein UrtA | NATL2A_1543910_1542633 | |
| ureG | Urease accessory protein UreG | NATL2A_1544660_1544043 | |
| ureF | Urease accessory protein UreF | NATL2A_1545331_1544660 | |
| ureE | Urease accessory protein UreE | NATL2A_1545747_1545352 | |
| ureD | Urease accessory protein UreD | NATL2A_1545895_1546818 |
a
XMU1408 does not contain this region.
b
MIT9515 does not contain this region.