Helicobacter
|
H. pylori
|
Medical |
Worldwide |
Laboratory reared |
Adult |
– |
Lab |
External surfaces/internal organs |
[70–72] |
Campylobacter
|
C. jejuni
|
Medical and veterinary |
Worldwide |
Poultry, piggery |
Adult/larvae |
6.2% |
Field/ Lab |
External surfaces/internal organs |
[73, 74, 87, 90] |
C. coli
|
Medical and veterinary |
Worldwide |
Poultry, piggery |
Adult |
90.1% |
Field |
External surfaces/internal organs |
[74] |
Others |
Medical and veterinary |
Worldwide |
Restaurant, refuse dumps, barbecue shops, fruits and food vendors, markets, poultries (broiler farms) |
Adult |
– |
Field |
External surfaces/internal organs |
[38, 75] |
Salmonella
|
S. typhimurium
|
Medical |
Worldwide |
Laboratory experiment |
Adult |
– |
Lab |
|
[37] |
S. enterica serovar Enteritidis
|
Medical |
Worldwide |
Poultry, dumpsters |
Adult/larvae |
6–70% |
Lab/field |
External surfaces/internal organs |
[23, 28, 39] |
Others |
Medical |
Worldwide |
Restaurant, refuse dumps, barbecue shops, fruits and food vendors, markets, fish vendors, human habitation |
Adult |
11.8–66.67% |
Field |
External surfaces/internal organs |
[25, 27, 29, 70–72, 91] |
Escherichia
|
E. coli
|
Medical |
Worldwide |
Human habitation, cafeteria and food centers, hospitals, open fields, poultry farms, slaughter houses, cattle farms, animal hospitals |
Adult/larvae |
10.5–76.3% |
Field/lab |
External surfaces/internal organs |
[2–24, 29–38, 40, 43–46, 48, 89, 92] |
Bacillus
|
B. anthrax
|
Medical and veterinary |
Worldwide |
Laboratory reared |
Adult |
– |
Lab |
External surfaces/Internal organs |
[76] |
B. megatarium
|
non |
Worldwide |
Cafeteria and food centers |
Adult |
50% |
Field |
External surfaces/Internal organs |
[7] |
B. sphaericus
|
Medical |
Worldwide |
Cafeteria and food centers |
Adult |
50% |
Field |
External surfaces/Internal organs |
[7] |
B. cereus
|
Medical |
Worldwide |
Fresh fish |
Larvae |
– |
Field |
External surfaces/Internal organs |
[46, 53] |
B. alvei
|
Medical |
Worldwide |
Cafeteria and food centers |
Adult |
50% |
Field |
External surfaces/Internal organs |
[7] |
B. pumilus
|
Medical |
Worldwide |
|
Adult |
– |
Field |
External surfaces/Internal organs |
[46] |
B. thuringiensis
|
non |
Worldwide |
|
Adult |
– |
Field |
External surfaces/Internal organs |
[46] |
Others |
Medical |
Worldwide |
Dairy farms, hospitals, slaughter houses, fruit and food centers |
Adult |
31.1% |
Field |
External surfaces |
[10, 20, 44, 61, 89] |
Staphylococcus
|
S. aureus
|
Medical |
Worldwide |
Human habitation, fresh fish |
Adult/ larvae |
26.9% |
Field |
External surfaces/Internal organs |
[40, 45, 53, 77, 92] |
S. epidermidis
|
Medical |
Worldwide |
Human habitation |
Adult |
– |
Field |
External surfaces/Internal organs |
[40] |
S. sciuri
|
Medical/veterinary |
Worldwide |
Dumpsters of restaurants |
Adult |
– |
Field |
External surfaces |
[46] |
S. saprophyticus
|
Medical |
Worldwide |
Dumpsters of restaurants |
Adult |
– |
Field |
External surfaces |
[46] |
S. xylosus
|
Medical |
Worldwide |
Dumpsters of restaurants |
Adult |
– |
Field |
External surfaces |
[46] |
Others |
Medical/veterinary |
Worldwide |
Poutry, animal farms, garden, garbage/dump areas, restaurants/cafeteria, markets, human habitation, hospitals |
Adult |
22.9–28.2% |
Field |
External surfaces/Internal organs |
[10, 20, 48, 78, 79, 89, 91] |
Enterococcus
|
E. faecalis
|
Medical |
Worldwide |
Restaurants, piggery farms |
Adult |
55.5–88.2% |
Field/lab |
External surfaces/Internal organs |
[21, 49, 50] |
E. faecium
|
Medical |
Worldwide |
Restaurants, piggery farms |
Adult |
6.8–12.8% |
Field/lab |
External surfaces/Internal organs |
[49, 50] |
E. casseliflavus
|
Medical |
Worldwide |
Restaurants, piggery farms |
Adult |
4.9–6.7% |
Field/lab |
External surfaces/Internal organs |
[49, 50] |
E. hirae
|
Medical/veterinary |
Worldwide |
piggery farms |
Adult |
12.8% |
Field/lab |
External surfaces/Internal organs |
[50] |
Aeromonas
|
A. caviae
|
Medical |
Worldwide |
Hospitals, streets, slaughter houses (abattoir) |
Adult |
39–78% |
Field |
Internal organs |
[48, 80, 81] |
A hydrophila
|
Medical |
Worldwide |
Open field |
Adult |
– |
Field |
Internal organs |
[82] |
Others |
Medical |
Worldwide |
Poutry, animal farms, garden, garbage/dump areas, restaurants/cafeteria, markets, human habitation, hospitals |
Adult |
– |
Field |
Internal organs |
[79] |
Shigella
|
S. sonnei
|
Medical |
Worldwide |
Hospitals, streets, slaughter houses |
Adult |
– |
Field |
Internal organs |
[48] |
S. dysenteriae
|
Medical |
Worldwide |
Dumpsters of restaurants |
Adult |
– |
Field |
Internal organs |
[46] |
Others |
Medical |
Worldwide |
Poultry, animal farms, garden, garbage/dump areas, restaurants/cafeteria, markets, human habitation, hospitals |
Adult |
4.8–66.67% |
field |
External surfaces/ internal organs |
[11, 13, 29, 38, 40, 43, 79, 91] |
Klebsiella
|
K. pneumoniae
|
Medical |
Worldwide |
Hospitals, human habitation, slaughter houses |
Adult |
11.3–82% |
field |
External surfaces/ internal organs |
[15, 47, 82] |
K. oxytoca
|
Medical |
|
Open field |
Adult |
– |
Field |
External surfaces |
[83] |
Others |
Medical |
|
Poutry, animal farms,garden, garbage/dump areas, restaurants/cafeteria, markets, human habitation, hospitals, slaughter houses, open field |
Adult |
– |
Field |
External surfaces |
[40, 44, 48, 61, 79, 89] |
Pseudomonas
|
P. aeruginosa
|
Medical |
Worldwide |
Dump sites, slaughter houses, open field, human habitation, fresh fish, hospitals |
Adult/larvae |
37% |
field |
External surfaces/internal organs |
[15, 19, 53, 61, 84] |
Others |
Medical |
Worldwide |
Hospitals, streets, slaughter houses, |
Adult |
21.8% |
Field |
External surfaces/internal organs |
[44, 48, 92] |
Proteus
|
P. mirabilis
|
Medical |
Worldwide |
Slaughter houses, hospitals |
Adult |
29.1% |
field |
External surfaces/internal organs |
[15] |
P. vulgaris
|
Medical |
Worldwide |
Human habitation |
Adult |
– |
Field |
External surfaces/internal organs |
[40] |
Proteus sp.
|
Medical |
Worldwide |
Slaughter houses, dump sites, open fields, human habitations |
Adult |
14.8% |
Field |
External surfaces/internal organs |
[61, 89, 92] |
Citrobacter
|
C. freundi
|
Medical |
Worldwide |
Cafeteria and food centers, Slaughter houses, hospitals |
Adult |
28.4% |
field |
External surfaces/internal organs |
[7, 15] |
Chronobacter
|
C. turicensis,
|
Medical |
Worldwide |
Poultry, dumpsters |
Adult/larvae |
14% |
Field/lab |
External surfaces/internal organs |
[23, 28] |
C. universalis
|
Medical |
Worldwide |
Poultry, dumpsters |
Adult/larvae |
– |
Field/lab |
External surfaces/internal organs |
[23, 28] |
C. sakazakii
|
Medical |
Worldwide |
Poultry, dumpsters |
Adult/larvae |
– |
Field/lab |
External surfaces/internal organs |
[23, 28, 46] |
Listeria
|
L. monocytogenes
|
Medical |
Worldwide |
Poultry, dumpsters |
Adult/larvae |
3–49.4% |
Field/lab |
External surfaces/internal organs |
[23, 28, 54] |
Others |
Medical/veterinary |
Worldwide |
Animal farms |
Adult |
– |
Field |
External surfaces/internal organs |
[78] |
Streptococcus
|
S. pyogenes
|
medical |
Worldwide |
Fresh fish, human habitation |
Adult/larvae |
– |
Field |
External surfaces/internal organs |
[40, 53] |
S. faecalis
|
Medical |
Worldwide |
Fresh fish |
Larvae |
– |
Field |
External surfaces/internal organs |
[53] |
Others |
Medical |
Worldwide |
Hospitals, slaughter houses, streets, dump sites, open fields, human habitation |
Adult |
66.67% |
Field |
External surfaces/internal organs |
[48, 61, 89, 91] |
Alternaria
|
Alternaria spp.
|
Medical |
Worldwide |
Fresh fish, Human habitation |
Larvae |
1.4–6% |
Field |
|
[15, 53, 55] |
Serratia
|
Serratia spp.
|
Medical |
worldwide |
Human habitation |
Adult |
– |
Field |
Internal organs |
[40] |
Enterobacter
|
Enterobacter spp.
|
Medical |
Worldwide |
Human habitation |
Adult |
– |
Field |
Internal organs |
[40, 89] |
Edwardsiella
|
Edwardsiella spp.
|
Medical |
Worldwide |
Poultry |
Adult |
– |
field |
External surfaces/internal organs |
[43] |
Providencia
|
Providencia spp.
|
Medical |
Worldwide |
Poultry, animal farms, garden, garbage/dump areas, restaurants/cafeteria, markets, human habitation, hospitals, slaughter houses, open field |
Adult |
– |
Field |
External surfaces/ internal organs |
[43, 79] |
Vibrio
|
Vibrio cholera non O1 |
Medical |
Worldwide |
Human habitation |
Adult |
45.7% |
Field |
Internal organs |
[29] |
Others |
Medical / veterinary |
Worldwide |
Animal farms |
Adult |
– |
Field |
External surfaces/ internal organs |
[78] |
Morganella
|
M. morgana
|
Medical |
Worldwide |
Poutry, animal farms,garden, garbage/dump areas, restaurants/cafeteria, markets, human habitation, hospitals, slaughter houses, open field |
Adult |
16.67% |
Field |
External surfaces/Internal organs |
[7, 79] |
Clostridium
|
Clostridium spp.
|
Medical |
Worldwide |
Dairy farms |
Adult |
– |
Field |
Internal organs |
[10] |
Corynebacterium
|
Corynebacterium spp.
|
Medical |
Worldwide |
Dairy farms |
Adult |
– |
Field |
Internal organs |
[10] |
Lactobacillus
|
Lactobacillus spp.
|
Medical |
Worldwide |
Dairy farms |
Adult |
– |
Field |
Internal organs |
[10] |
Yersinia
|
Y. enterocolitica
|
Medical |
Worldwide |
Hospitals, streets, slaughter houses |
Adult |
– |
Field |
Internal organs |
[48] |
Burkholderia
|
B. pseudomallei
|
Medical |
Worldwide |
Open field |
Adult |
– |
Field |
Internal organs |
[83] |
Acinetobacter
|
A. baumanni
|
Medical |
worldwide |
Poultry, dumpsters |
Adult |
– |
Field |
Internal organs |
[46, 89] |
Methylobacterium
|
M. persicinum
|
Medical |
Worldwide |
Poultry, dumpsters |
Adult |
– |
Field |
Internal organs |
[46] |
Micrococcus
|
Micrococcus sp.
|
Medical |
Worldwide |
Garbage/dump areas, poultry, restaurants |
Adult |
– |
Field |
External surfaces/Internal organs |
[89] |