Table 1.
Summary of the Illumina MiSeq sequence data and statistical analysis of the bacterial diversity in the stomach, intestine and caecum of normal and ERE rabbits.
Item1 | S | I | C | P-value | |||||||
---|---|---|---|---|---|---|---|---|---|---|---|
NS | ES | P | NI | EI | P | NC | EC | P | Normal | ERE | |
Valid sequence | 55920c | 55675C | 0.98 | 92169b | 69021B | 0.10 | 134172a | 117384A | 0.23 | <0.01 | <0.01 |
OTUs | 1263 | 1055C | <0.01 | 1256 | 909B | <0.01 | 1303 | 1211A | 0.01 | 0.40 | 0.02 |
Chao1 | 1957b | 1711B | <0.01 | 1934b | 1599B | <0.01 | 2152a | 1914A | <0.01 | <0.01 | <0.01 |
Ace | 2087b | 1784B | <0.01 | 2047b | 1715B | <0.01 | 2252a | 2043A | <0.01 | <0.01 | <0.01 |
Shannon | 5.46 | 4.86A | <0.01 | 5.32 | 4.39B | <0.01 | 5.49 | 5.32A | 0.02 | 0.92 | 0.03 |
Simpson | 0.97 | 0.95 | 0.36 | 0.94 | 0.93 | 0.86 | 0.97 | 0.97 | 0.78 | 0.55 | 0.07 |
1Data are presented as the mean of six samples, means with different superscripts of minuscule represent significant differences among the three digestive parts of normal rabbits, and means with different superscripts of majuscule represent significant differences among the three parts of ERE rabbits.