Table 3.
Platform | Chemistry | Number of raw reads | Total bases of raw reads (bp) | No of processed reads (bp) | Total bases after processing (bp) | Coverage (×) |
---|---|---|---|---|---|---|
Illumina HiSeq | PE (150× 2) | 137,231,716 | 41,443,978,232 | 128,115,515 | 37,507,019,850 | 109 |
Illumina HiSeq (2-4 Kb) | MP (150× 2) | 25,436,869 | 7,681,934,438 | 10,776,772 | 2,408,197,618 | 20 |
Illumina HiSeq (4-6Kb) | MP (150× 2) | 19,268,378 | 5,819,050,156 | 8,470,072 | 1,898,380,817 | 15 |
Nanopore | Long read (5-1,345,484) | 782,591 | 2,685,280,348 | 782,591 | 2,685,280,348 | 7.06 |
Total coverage | 151× |