Table 5.
Overview of repeat elements in teak genome
| Type | Number of elements | Length occupied (bp) | Percentage in genome |
|---|---|---|---|
| Retroelements | 6,976 | 5,153,927 | 1.62 |
| SINEs | 1 | 46 | 0.00 |
| LINEs | 457 | 122,681 | 0.04 |
| L1/CIN4 | 457 | 122,681 | 0.04 |
| LTR elements | 6,518 | 5,031,200 | 1.58 |
| Ty1/Copia | 2,687 | 2,212,758 | 0.70 |
| Gypsy/DIRS1 | 2,499 | 2,564,424 | 0.81 |
| DNA transposons | 4,431 | 749,766 | 0.24 |
| hobo-Activator | 647 | 139,917 | 0.04 |
| Tc1-IS630-Pogo | 1,298 | 216,636 | 0.07 |
| Tourist/Harbinger | 285 | 70,800 | 0.02 |
| Unclassified | 242 | 63,153 | 0.02 |
| Total interspersed repeats | − | 5,966,846 | 1.88 |
| Small RNA | 158 | 104,298 | 0.03 |
| Satellites | 1 | 54 | 0.00 |
| Simple repeats | 253,260 | 10,655,131 | 3.36 |
| Low complexity | 46,994 | 2,328,770 | 0.73 |
| Total bases masked | 19,046,577 | 6.00 | |