Table 7.
The number, length, frequency and density of six different types of SSRs
| Nucleotide | Total counts | Total length (bp) | Average length (bp) | Frequency (loci/Mb) | Density (bp/Mb) | SSRs in the whole genome (%) |
|---|---|---|---|---|---|---|
| Mononucleotide | 88,766 | 1,321,753 | 14.89 | 279.53 | 4,162.3 | 45.32 |
| Dinucleotide | 81,215 | 1,664,278 | 20.49 | 255.75 | 5,241 | 41.4 |
| Trinucleotide | 14,654 | 286,074 | 19.52 | 46.15 | 900.88 | 7.48 |
| Tetranucleotide | 8,086 | 146,728 | 18.15 | 25.46 | 462.06 | 4.13 |
| Pentanucleotide | 1,967 | 42,960 | 21.84 | 6.19 | 135.29 | 1 |
| Hexanucleotide | 1,161 | 29,724 | 25.6 | 3.66 | 93.604 | 0.59 |
Cd, compound; cx, complex; icd, interrupted compound; icx, interrupted complex; ip, imperfect; p, perfect.