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. Author manuscript; available in PMC: 2019 Aug 1.
Published in final edited form as: Muscle Nerve. 2018 Apr 23;58(2):286–292. doi: 10.1002/mus.26135

Table 1.

Demographics, GNE mutations, muscle type and fluorescence quantitation per biopsy

Donor Age
(y)
Sex GNE
Mutations *
Muscle
Biopsied
No. Cells in
Biopsy
Avg cell
length §
SNA Area/Cav-3 Area
(per avg cell length)
SNA/CAV-3 Total Intensity
(per avg cell length)
Control Group:
C1 27 Male Normal biceps branchii (L) 5,338 23.26 4,988,767 (214,505) 2,141,539,604 (92,080,962)
C2 42 Female Normal biceps branchii (L) 6,146 18.44 4,585,638 (248,657) 1,298,005,973 (70,384,594)
C3 32 Female Normal biceps branchii (L) 3,137 16.80 2,791,129 (166,133) 882,982,901 (52,556,721)
C4 31 Male Normal biceps branchii (L) 13,304 17.94 10,202,823 (568,718) 3,138,608,250 (174,949,970)

Average: 6,981 19.11 5,642,089 (299,503) 1,865,284,182 (97,493,062)

GNE Myopathy Group:
GNE-M1 27 Male p.V603L/ p.V603L biceps branchii (L) 1,393 11.53 816,286 (70,798) 367,144,808 (31,843,163)
GNE-M2 29 Male p.V603L/p.V603L biceps branchii (L) 7,332 17.46 5,328,311 (305,148) 1,391,871,694 (79,711,274)
GNE-M3 24 Male p.V603L/p.A622T biceps branchii (L) 3,114 16.14 1,936,055 (119,976) 816,679,955 (50,608,913)
GNE-M4 55 Male p.D207V/pV603L triceps branchii (L) 1,223 23.14 1,404,210 (60,683) 540,816,086 (23,371,399)
GNE-M5 40 Female p.D207V/p.K458N # hamstring (R) 3,318 23.81 3,831,255 (160,939) 1,529,534,462 (64,251,094)
GNE-M6 39 Female p.D207V/p.V603L tibialis anterior (R) 2,600 21.06 2,279,575 (108,224) 819,170,403 (38,890,517)

Average: 3,163 18.86 2,599,282 (137,628) 910,869,568 (48,112,727)
*

Mutation nomenclature according to GNE2 isoform GenBank NP_001121699.

L, left; R, right.

Manually determined, using ImageJ software.

§

Avg = average. As calculated by Image J software, see text for details.

Area or Intensity of fluorescence (in pixels) determined by Definiens Architect software.

Plotted in Figure 2.

#

p.K458N is a novelGNE variant (disease causing by MutationTaster, deleterious by SIFT, benign by polyphen, CADD_phred score of 25).