Table 1.
Number of predicted unique recipient immunopeptides (URiPs) and mass spectrometry (MS) peptides in the region where Pmm > 10 and 20%.
| HLA allele | NetMHCpan WB | NetMHCpan SB | MixMHC WB | MixMHC SB | Overlap WB | Overlap SB | MS peptides |
|---|---|---|---|---|---|---|---|
| Region of Pmm > 10% | |||||||
| A*01:01 | 3,097 | 750 | 2,713 | 634 | 1,684 | 390 | 9 |
| A*02:01 | 4,161 | 1,400 | 3,032 | 717 | 1,782 | 451 | 20 |
| A*03:01 | 3,167 | 923 | 2,771 | 647 | 1,864 | 404 | 23 |
| A*11:01 | 4,002 | 1,268 | 2,969 | 693 | 1,936 | 473 | 2 |
| A*24:02 | 3,419 | 984 | 2,728 | 638 | 1,641 | 404 | 4 |
| B*07:02 | 5,372 | 1,758 | 3,634 | 888 | 2,519 | 657 | 40 |
| B*08:01 | 4,779 | 1,395 | 2,989 | 691 | 1,838 | 377 | 15 |
| B*15:01 | 3,822 | 1,076 | 2,848 | 681 | 1,511 | 277 | 7 |
| B*35:01 | 6,523 | 1,724 | 2,953 | 706 | 2,133 | 488 | 16 |
| B*44:02 | 3,198 | 894 | 2,768 | 633 | 1,623 | 373 | 4 |
| B*57:01 | 3,291 | 941 | 2,907 | 827 | 1,797 | 515 | 9 |
| Region of Pmm > 20% | |||||||
| A*01:01 | 1,495 | 357 | 1,325 | 293 | 801 | 185 | 2 |
| A*02:01 | 2,025 | 699 | 1,464 | 361 | 875 | 226 | 9 |
| A*03:01 | 1,497 | 449 | 1,306 | 330 | 874 | 200 | 13 |
| A*11:01 | 1,864 | 622 | 1,411 | 313 | 903 | 215 | 1 |
| A*24:02 | 1,635 | 482 | 1,330 | 304 | 795 | 192 | 1 |
| B*07:02 | 2,571 | 845 | 1,740 | 420 | 1,238 | 322 | 23 |
| B*08:01 | 2,289 | 696 | 1,466 | 323 | 896 | 183 | 6 |
| B*15:01 | 1,890 | 519 | 1,405 | 342 | 746 | 141 | 6 |
| B*35:01 | 3,135 | 846 | 1,422 | 344 | 1027 | 238 | 12 |
| B*44:02 | 1,540 | 430 | 1,338 | 323 | 783 | 193 | 1 |
| B*57:01 | 1,567 | 444 | 1,387 | 1387 | 856 | 254 | 5 |