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Prediction performance on three PPINs and CYC2008 is used as benchmark. The comparisons are in terms of the geometric accuracy (ACC), the fraction of reference complexes which are matched by at least one predicted cluster (Fraction), and the maximum matching ratio (MMR). Various PPI datasets include a Collins et al., b Gavin et al., c Krogan core et al. The total height height of each bar is the value of the composite scores of three metrics on a given network. Larger scores are better
