Table 3. Comparison of the results of our method with those of the query-based method in the UniProtKB/Swiss-Prot and GWAS Catalog triage.
Both query-based and CNN-based results were evaluated by the curators, resulting in the total number of curatable publications below.
| UniProtKB/Swiss-Prot | GWAS Catalog | ||
|---|---|---|---|
| Total number of target publications | 4,680 (3 months, variant-containing publications) | 64,405 (3 weeks, all publications) | |
| Total number of curatable publications | 424 | 27 | |
| Query-based | Total | 79 | 304 |
| Curatable | 36 (P: 45.57%, R: 8.49%) | 27 (P: 8.88%, R: 100%) | |
| Our CNN-based Method* | Total | 501 | 98 |
| Curatable | 413 (P: 82.43%, R: 97.41) | 26 (P: 26.53%, R: 96.30%) | |
* As requested by the curators, UniProtKB results are filtered using tmVar as only articles with explicit variant mentions are within the scope of its data curation.