Table 2.
Distribution of the small RNA among different categories at different times of mastitis induction.
| dpi | Clean reads | rRNA | snRNA | snoRNA | tRNA | Repbase | Unannotated | miRNA | Unannotated small RNA |
|---|---|---|---|---|---|---|---|---|---|
| 0 | 26,833,388 | 639,348 | 12 | 181,237 | 116,546 | 494,265 | 25,401,980 | 21,961,291 | 3,440,689 |
| 100.00% | 2.38% | 0.00% | 0.68% | 0.43% | 1.84% | 94.67% | 81.84% | 12.83% | |
| 1 | 16,600,883 | 518,804 | 10 | 123,445 | 89,050 | 317,135 | 15,552,439 | 13,350,150 | 2,202,289 |
| 100.00% | 3.13% | 0.00% | 0.74% | 0.54% | 1.91% | 93.68% | 80.42% | 13.26% | |
| 3 | 14,615,093 | 501,037 | 12 | 109,114 | 127,350 | 270,833 | 13,606,747 | 11,593,688 | 2,013,059 |
| 100.00% | 3.43% | 0.00% | 0.75% | 0.87% | 1.85% | 93.10% | 79.33% | 13.77% | |
| 5 | 12,570,752 | 362,417 | 12 | 99,001 | 45,138 | 262,799 | 11,801,385 | 10,157,070 | 1,644,315 |
| 100.00% | 2.88% | 0.00% | 0.79% | 0.36% | 2.09% | 93.88% | 80.80% | 13.08% | |
| 7 | 11,887,296 | 382,122 | 3 | 66,238 | 44,194 | 134,766 | 11,259,973 | 9,842,917 | 1,417,056 |
| 100.00% | 3.21% | 0.00% | 0.56% | 0.37% | 1.13% | 94.72% | 82.80% | 11.92% |