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. 2018 Aug 23;8:12699. doi: 10.1038/s41598-018-30783-1

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© The Author(s) 2018

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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A diet consisting exclusively of nutritional meal replacement results in a flattening of the strain fitness landscape across the dominant genera of the gut microbiota. (a) Mean AMPHORA gene SNP heterozygosities within each participant on days 3 and 6, averaged across all bacterial species and normalized to baseline levels (preB). (b) Mean AMPHORA gene SNP heterozygosities averaged across the most abundant genera in the gut.