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. 2018 Aug 23;8:12699. doi: 10.1038/s41598-018-30783-1

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© The Author(s) 2018

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Nutritional meal replacement results in stress-like responses in the microbiota. (a) Log-transformed mean relative abundance of various bacteriophages in all participants, normalized to baseline levels (preB). (b) Mean and standard error timeseries of the relative abundance of Roseburia, Bilophila and Sutterella. (c) Relative abundance of mucinase genes on day preB, day 3 and day 6. (d) Bristol Stool Scale of all participants throughout the study.