Table 1. Filtered miRNA sponge candidates.
The table provides an overview of miRNA sponge candidates that have at least 10 binding sites more than what is required for statistical significance, can be annotated with known genes, and have more than 9% of predicted miRNA binding sites within exons. The column cluster size lists the number of binding sites in the given cluster for real genome and the cluster size cutoff for statistical significance obtained from shuffling. The sponge candidates are sorted based on the difference between these two cluster sizes.
| miRNA | Cluster size real / cutoff |
Genomic coordinate chromosome: range (strand) |
Annotation | |
|---|---|---|---|---|
| hsa-miR-7-5p | 76 | 20 | chrX: 139 865 250–139 866 947 (+) | circRNA: ciRS-7 |
| hsa-miR-4310 | 54 | 26 | chr22: 50 671 491–50 673 762 (−) | protein_coding: TUBGCP6 |
| hsa-miR-376b-5p | 38 | 18 | chr15: 101 093 988–101 095 732 (−) | pseudogene: PRKXP1 |
| hsa-miR-766-5p | 70 | 51 | chrX: 139 865 341–139 867 009 (+) | circRNA: ciRS-7 |
| hsa-miR-4295 | 35 | 17 | chr16: 690 762–691 826 (−) | pseudogene: AL022341.1 |
| hsa-miR-4729 | 44 | 27 | chr16: 90 060 979–90 062 561 (+) | circRNA: hsa_circ_0041137 |
| hsa-miR-190b | 38 | 21 | chr17: 412 328–413 728 (+) | antisense: RP5-1029F21.3 |
| hsa-miR-93-3p | 61 | 46 | chr16: 90 060 884–90 062 555 (+) | circRNA: hsa_circ_0041137 |
| hsa-miR-8077 | 52 | 38 | chr17: 80 211 257–80 213 687 (−) | circRNA: hsa_circ_0046395 |
| hsa-miR-545-3p | 32 | 18 | chr10: 133 771 747–133 773 035 (+) | protein_coding: PPP2R2D |
| hsa-miR-4712-3p | 38 | 24 | chr12: 50 745 528–50 747 302 (−) | protein_coding: FAM186A |
| hsa-miR-433-5p | 44 | 30 | chr16: 600 512–601 669 (−) | antisense: LA16c-366D1.3 |
| hsa-miR-649 | 30 | 18 | chr8: 142 262 432–142 264 762 (−) | circRNA: hsa_circ_0001829 |
| hsa-miR-219b-5p | 38 | 27 | chr22: 21 537 410–21 538 848 (+) | processed_transcript: FAM230B |
| hsa-miR-6761-5p | 49 | 39 | chr14: 107 147 088–107 148 903 (−) | circRNA: hsa_circ_0033997 |
| hsa-miR-649 | 28 | 18 | chr9: 139 996 161–139 997 435 (+) | circRNA: hsa_circ_0089635 |
| hsa-miR-4668-3p | 27 | 17 | chrX: 139 865 277–139 866 621 (−) | protein_coding: CDR1 |
| hsa-miR-5692b | 20 | 10 | chr3: 195 607 265–195 609 187 (−) | circRNA: hsa_circ_0001377 |
| hsa-miR-34a-3p | 31 | 21 | chr10: 133 770 676–133 771 926 (+) | protein_coding: PPP2R2D |