Table 2.

Imprinted genetic loci with BPA-related DHMR.

Chr	Start	End	Gene ID	Gene Name	Location	Direction with BPA exposure	csaw score	FDR
chr2	174315451	174315750	14683	Gnas	Intronic	$+$	113.4	$<0.001$
chr11	12004801	12005100	14783	Grb10	Intronic	$+$	70.5	$<0.001$
chr10	13130651	13131050	22634	Plagl1	Exonic	$+$	60.7	$<0.001$
chr6	30957751	30958050	619665	Klf14	Exonic	$-$	55.9	$<0.001$
chr17	8746901	8747050	23984	Pde10a	intronic	$+$	50.1	$<0.001$
chr17	12828001	12828550	104103	Airn	Intronic	$-$	16.2	0.02
chr13	24335001	24335150	12763	Cmah	Intronic	$-$	13.1	0.05
chr7	60207401	60207600	20646	Snrpn	Intronic	$-$	13.0	0.05
chr6	5079501	5079850	243725	Ppp1r9a	Intronic	$-$	12.8	0.05
chr7	143348051	143348350	16535	Kcnq1	Intronic	$-$	11.5	0.07
chr10	13402051	13402250	215789	Phactr2	Intronic	$-$	11.3	0.07
chr13	108963951	108964200	238871	Pde4d	Intronic	$+$	10.1	0.10

Note: List of imprinted loci with annotated, significant ($\text{FDR}<0.10$) DHMRs generated from csaw modeling results. For csaw results, a transformed FDR is used for the score, such that $\text{score}=-10\times \log 10\left(\text{FDR}\right)$; higher score indicates a larger degree of significance (lower FDR value). Additionally, direction of effect by BPA exposure is shown, with a ($+$) indicating increased 5-hmC with BPA exposure and a ($-$) indicating decreased 5-hmC with BPA exposure. BPA, bisphenol-A; Chr, chromosome; DHMR, differentially hydroxymethylated region; FDR, false discovery rate; ID, identification.