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. Author manuscript; available in PMC: 2019 Aug 23.
Published in final edited form as: Cell. 2018 Jul 26;174(5):1188–1199.e14. doi: 10.1016/j.cell.2018.06.049

Figure 2. Dps has no influence on the transcriptome and mild influence on the proteome in stationary-phase E. coli cells.

Figure 2.

(A) The relative amounts of total RNA and mRNA (mean ± SE).. (B) Differential expression analysis of RNA sequencing. For each gene, the mean expression in the wild-type strain is plotted against the corresponding value in the Δdps strain. Colors represent the fold-difference between the two strains. (C) The significance of the shift in mean expression for each mRNA species (as determined by the p or q value) is plotted against the fold change. (D) Total protein levels (mean ± SE). (E) Differential expression profile of SILAC analysis. For each protein, the mean abundance in the wild-type strain (y-axis) is plotted against the corresponding value in the Δdps strain (x-axis). Colors represent the fold-difference between the two strains. (F) The significance of the shift in mean expression for each protein species (as determined by the p or q value) is plotted against the fold change. See also Figures S2 and S3.