Table 1.
Standard contiguity metrics for the three genome assemblies, ALLPATHS-LG, ABySS, and SOAPdenovo, showing the number of scaffolds (n.scaff), number of scaffolds longer than 1000 base pairs (n.scaff >1000), the N50 and N80 measures, the maximum scaffold length (max_scf_lgth), the total assembly length (Ass.lgth), as well as the total assembly length for scaffolds greater than 1000 base pairs (Ass_lgth_ctg > 1000).
| Assembler | n.scaff | n.scaff >1000 | N50 | N80 | max_scf_lgth | Ass.lgth | Ass_lgth_ctg >1000 |
|---|---|---|---|---|---|---|---|
| ALLPATHS-LG | 9,542 | 9,011 | 3,093,332 | 1,158,118 | 19,816,433 | 1,049,058,013 | 1,048,547,872 |
| ABySS | 2,003,503 | 65,683 | 88,266 | 23,906 | 1,364,009 | 1,252,241,058 | 1,006,935,606 |
| SOAPdenovo | 3,270,383 | 77115 | 75,763 | 33,056 | 2,562,666 | 1,913,786,802 | 1,237,693,708 |