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. 2018 Aug 24;8:12714. doi: 10.1038/s41598-018-30297-w

Table 1.

Repeats (≥60 bp) in the kenaf mt genome.

No. Size (bp) Identity (%) Copy-1 Copy-2a Copy-3a Typeb
Start End Start End Start End
R1 7782 100 814 8595 196628 188847 P
R2 1877 100 62808 64684 356837 354961 P
R3 1525 100 60919 62443 446303 444779 P
R4 842 100 204427 205268 367743 384565 F
R5 535 100 62438 63272 445775 444941 P
R6 468 100 287766 288233 413387 412920 P
R7 433 100 62845 63277 136700 137132 358244 357812 F/P
R8 394 100 431948 432341 569460 569853 F
R9 374 100 4933 5306 199917 199544 380908 381281 P/F
R10 229 100 237021 237249 320344 320572 F
R11 210 100 28517 28726 243614 243405 P
R12 204 100 84633 84836 413895 414098 F
R13 190 100 326 515 204717 204528 368033 367844 P
R14 181 100 284825 284645 539224 539404 F
R15 174 100 73673 73846 539296 539469 F
R16 165 100 358549 358713 445775 445939 F
R17 146 100 247536 247681 510485 510630 F
R18 137 100 102129 102265 458421 458557 F
R19 135 100 683 817 204407 204273 P
R20 128 100 136700 136827 445775 445648 P
R21 115 100 683 797 367743 367629 P
R22 109 100 45409 45517 456623 456731 F
R23 109 100 73673 73781 284897 285005 F
R24 107 100 85072 85178 273126 273232 F
R25 103 100 176182 17714 380789 380891 F
R26 97 100 47563 47659 538666 538762 F
R27 91 100 362171 362261 532778 532868 P
R28 88 100 34694 34781 258881 258968 F
R29 88 100 102046 102133 137837 137924 P
R30 88 100 140828 140915 465024 465111 P
R31 86 100 62665 62750 268392 268477 445997 446082 F/ P
R32 82 100 31305 31386 301188 301269 F
R33 81 100 368575 368655 456163 456243 F
R34 80 100 4243 4322 200901 200980 268607 268686 P /F
R35 77 100 28446 28522 243819 243895 P
R36 75 100 333330 333404 429353 429427 P
R37 74 100 11547 11620 134973 135046 F
R38 73 100 41569 41641 438195 438267 F
R39 73 100 268577 268647 539445 539517 F
R40 70 100 189 258 204978 205047 368294 368373 P
R41 66 100 141384 141449 452383 452448 P
R42 65 100 4873 4937 200286 200350 380849 380913 P/F
R43 65 100 200286 380852 P
R44 63 100 141511 141573 452513 452575 F
R45 63 100 41704 41766 438338 438400 F
R46 61 100 47590 475650 275165 275225 538696 538756 P
R47 61 100 432343 432403 569854 569914 F
R48 61 100 73792 73852 285008 285068 F

aCompare with copy-1 as control. bThe letters F and P represent forward repeats and palindromic repeats, respectively. The numbers listed in the starting and ending points refer to positions in the kenaf mt genome sequence (GenBank accession MF163174).