Table 1.
No. | Size (bp) | Identity (%) | Copy-1 | Copy-2a | Copy-3a | Typeb | |||
---|---|---|---|---|---|---|---|---|---|
Start | End | Start | End | Start | End | ||||
R1 | 7782 | 100 | 814 | 8595 | 196628 | 188847 | P | ||
R2 | 1877 | 100 | 62808 | 64684 | 356837 | 354961 | P | ||
R3 | 1525 | 100 | 60919 | 62443 | 446303 | 444779 | P | ||
R4 | 842 | 100 | 204427 | 205268 | 367743 | 384565 | F | ||
R5 | 535 | 100 | 62438 | 63272 | 445775 | 444941 | P | ||
R6 | 468 | 100 | 287766 | 288233 | 413387 | 412920 | P | ||
R7 | 433 | 100 | 62845 | 63277 | 136700 | 137132 | 358244 | 357812 | F/P |
R8 | 394 | 100 | 431948 | 432341 | 569460 | 569853 | F | ||
R9 | 374 | 100 | 4933 | 5306 | 199917 | 199544 | 380908 | 381281 | P/F |
R10 | 229 | 100 | 237021 | 237249 | 320344 | 320572 | F | ||
R11 | 210 | 100 | 28517 | 28726 | 243614 | 243405 | P | ||
R12 | 204 | 100 | 84633 | 84836 | 413895 | 414098 | F | ||
R13 | 190 | 100 | 326 | 515 | 204717 | 204528 | 368033 | 367844 | P |
R14 | 181 | 100 | 284825 | 284645 | 539224 | 539404 | F | ||
R15 | 174 | 100 | 73673 | 73846 | 539296 | 539469 | F | ||
R16 | 165 | 100 | 358549 | 358713 | 445775 | 445939 | F | ||
R17 | 146 | 100 | 247536 | 247681 | 510485 | 510630 | F | ||
R18 | 137 | 100 | 102129 | 102265 | 458421 | 458557 | F | ||
R19 | 135 | 100 | 683 | 817 | 204407 | 204273 | P | ||
R20 | 128 | 100 | 136700 | 136827 | 445775 | 445648 | P | ||
R21 | 115 | 100 | 683 | 797 | 367743 | 367629 | P | ||
R22 | 109 | 100 | 45409 | 45517 | 456623 | 456731 | F | ||
R23 | 109 | 100 | 73673 | 73781 | 284897 | 285005 | F | ||
R24 | 107 | 100 | 85072 | 85178 | 273126 | 273232 | F | ||
R25 | 103 | 100 | 176182 | 17714 | 380789 | 380891 | F | ||
R26 | 97 | 100 | 47563 | 47659 | 538666 | 538762 | F | ||
R27 | 91 | 100 | 362171 | 362261 | 532778 | 532868 | P | ||
R28 | 88 | 100 | 34694 | 34781 | 258881 | 258968 | F | ||
R29 | 88 | 100 | 102046 | 102133 | 137837 | 137924 | P | ||
R30 | 88 | 100 | 140828 | 140915 | 465024 | 465111 | P | ||
R31 | 86 | 100 | 62665 | 62750 | 268392 | 268477 | 445997 | 446082 | F/ P |
R32 | 82 | 100 | 31305 | 31386 | 301188 | 301269 | F | ||
R33 | 81 | 100 | 368575 | 368655 | 456163 | 456243 | F | ||
R34 | 80 | 100 | 4243 | 4322 | 200901 | 200980 | 268607 | 268686 | P /F |
R35 | 77 | 100 | 28446 | 28522 | 243819 | 243895 | P | ||
R36 | 75 | 100 | 333330 | 333404 | 429353 | 429427 | P | ||
R37 | 74 | 100 | 11547 | 11620 | 134973 | 135046 | F | ||
R38 | 73 | 100 | 41569 | 41641 | 438195 | 438267 | F | ||
R39 | 73 | 100 | 268577 | 268647 | 539445 | 539517 | F | ||
R40 | 70 | 100 | 189 | 258 | 204978 | 205047 | 368294 | 368373 | P |
R41 | 66 | 100 | 141384 | 141449 | 452383 | 452448 | P | ||
R42 | 65 | 100 | 4873 | 4937 | 200286 | 200350 | 380849 | 380913 | P/F |
R43 | 65 | 100 | 200286 | 380852 | P | ||||
R44 | 63 | 100 | 141511 | 141573 | 452513 | 452575 | F | ||
R45 | 63 | 100 | 41704 | 41766 | 438338 | 438400 | F | ||
R46 | 61 | 100 | 47590 | 475650 | 275165 | 275225 | 538696 | 538756 | P |
R47 | 61 | 100 | 432343 | 432403 | 569854 | 569914 | F | ||
R48 | 61 | 100 | 73792 | 73852 | 285008 | 285068 | F |
aCompare with copy-1 as control. bThe letters F and P represent forward repeats and palindromic repeats, respectively. The numbers listed in the starting and ending points refer to positions in the kenaf mt genome sequence (GenBank accession MF163174).