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. Author manuscript; available in PMC: 2018 Aug 25.
Published in final edited form as: Cell Rep. 2018 Jul 3;24(1):259–268.e3. doi: 10.1016/j.celrep.2018.06.022
REAGENT or RESOURCE SOURCE IDENTIFIER
Deposited Data
20S Proteasome Core This paper EMDB: EMD-7946
26S Single-capped Proteasome This paper EMDB: EMD-7947
Fraction 4 proteomics data This paper PRIDE: PXD010026
Experimental Models: Cell Lines
HEK293T ATCC CRL3216
Software and Algorithms
Appion (Lander et al., 2009) http://nramm.nysbc.org/software/
FindEM (Roseman, 2004) N/A
DoG Picker (Voss et al., 2009) N/A
Proteome Discoverer ThermoFisher Scientific https://www.thermofisher.com/order/catalog/product/OPTON-30795
RELION (Scheres, 2012) http://www2.mrc-lmb.cam.ac.uk/relion/index.php?title=Main_Page
CTFFIND4 (Rohou and Grigorieff, 2015) http://grigoriefflab.janelia.org/ctf
cryoSPARC (Punjani et al., 2017) https://cryosparc.com/
Chimera (Pettersen et al., 2004) https://www.cgl.ucsf.edu/chimera/
SearchGUI (Vaudel et al., 2011) http://compomics.github.io/projects/searchgui.html
PeptideShaker (Vaudel et al., 2015) http://compomics.github.io/projects/peptide-shaker.html
Cytoscape (Shannon et al., 2003) http://www.cytoscape.org/
Other
Formvar/Carbon 400 mesh, Copper approx. grid hole size: 42μm Ted Pella 01754-F