Table 3.
Results of the bird samples sequencing with prior enrichment using the primers panel. The number of viral reads and total number of reads per corresponding sample are shown. For three samples (B11, B23, and B24, highlighted in bold) there was a specific primer pair in the panel present for the amplification of the detected genus. Closest viral homologs names and their GenBank IDs are shown.
| Bird ID | Viruses (closest homologs) detected |
Host specie |
GenBank IDs of the detected viruses | Number of viral reads in the sample | Total number of reads obtained for the sample |
|---|---|---|---|---|---|
| B11 | Duck-dominant coronavirus∣Avian coronavirus∣Bird droppings coronavirus | Taiga Bean Goose | AKQ98474.1, AKQ98475.1, APU51837.1, AIY51827.1, CAH69463.1 | 4,342 | 108,833 |
|
| |||||
| B23 | Duck-dominant coronavirus∣Avian coronavirus∣Bird droppings coronavirus | Taiga Bean Goose | AKQ98474.1, AKQ98475.1, APU51837.1, AIY51827.1, CAH69463.1 | 83,730 | 194,156 |
|
| |||||
| B24 | Duck-dominant coronavirus | Taiga Bean Goose | AKQ98474.1, AKQ98475.1 | 4,554 | 90,430 |
|
| |||||
| B27 | Sanxia water strider virus 16 | Temminck's Stint | YP_009337377.1 | 4,062 | 103,488 |
|
| |||||
| B27 | Fowl aviadenovirus C∣Turkey aviadenovirus B | Temminck's Stint | ACL68145.1, ANB27700.1, ALY06332.1, ALY06333.1 | 54 | 103,488 |
|
| |||||
| B27 | Cimodo virus | Temminck's Stint | YP_009059075.1 | 160 | 103,488 |
|
| |||||
| B46 | Watercress white vein virus ∣ Turnip yellow mosaic virus | Taiga Bean Goose | AFC95826.1, AMH40128.1 | 636 | 28,468 |
|
| |||||
| B49 | Circovirus | Taiga Bean Goose | AEL87792.1 | 180 | 149,230 |
|
| |||||
| B58 | Lake Sarah-associated circular virus-32 | Taiga Bean Goose | ALE29729.1 | 10 | 42,348 |
|
| |||||
| B66 | Duck aviadenovirus B | Fieldfare | YP_009047166.1 | 198 | 159,604 |
|
| |||||
| B68 | Duck adenovirus A | Common tern | AGS11269.1, NP_044717.1 | 95,872 | 256,549 |
|
| |||||
| B69 | Tunis virus | Taiga Bean Goose | AMT75434.1 | 16 | 126,648 |