Table 2.
Summary of the single nucleotide polymorphisms (SNPs) and insertions and deletions (InDels) that showed distinct allelic distribution in the differentiated genomic regions between large architecture (LA) and small architecture (SA) lotus groups.
| Category | Number of SNPs | Category | Number of InDels |
|---|---|---|---|
| Upstream | 306 | Upstream | 56 |
| Exonic_Stop gain | 3 | Exonic_Stop gain | 1 |
| Exonic_Synonymous | 88 | Exonic_Frameshift deletion | 2 |
| Exonic_Non-synonymous | 117 | Exonic_Frameshift insertion | 2 |
| Intronic | 2,332 | Exonic_Non-frameshift insertion | 1 |
| Splicing | 1 | Intronic | 342 |
| Downstream | 266 | Downstream | 48 |
| Intergenic | 14,041 | Intergenic | 1,102 |
| Total | 17,154 | Total | 1,554 |