Table 4. Sequence Type classification and allelic profiles of the phylogroup B2 of the ExPEC isolates.
Isolate ID | ST | adk | fumC | gyrB | icd | mdh | purA | recA | clonal complex | Phylogenetic classification | ESBL (+/-) | O25 |
---|---|---|---|---|---|---|---|---|---|---|---|---|
3 | 131 | 53 | 40 | 47 | 13 | 36 | 28 | 29 | ST131 Cplx | B2 | + | + |
4 | 131 | 53 | 40 | 47 | 13 | 36 | 28 | 29 | ST131 Cplx | B2 | + | + |
5 | 95 | 37 | 38 | 19 | 37 | 17 | 11 | 26 | ST95 Cplx | B2 | − | |
6 | 131 | 53 | 40 | 47 | 13 | 36 | 28 | 29 | ST131 Cplx | B2 | + | + |
8 | 80 | 13 | 24 | 19 | 14 | 23 | 1 | 10 | ST568 Cplx | B2 | − | |
16 | 131 | 53 | 40 | 47 | 13 | 36 | 28 | 29 | ST131 Cplx | B2 | + | + |
17 | 14 | 14 | 14 | 10 | 14 | 17 | 7 | 10 | ST14 Cplx | B2 | − | |
19 | 10 | 550 | 11 | 4 | 8 | 8 | 8 | 2 | ST10 Cplx | B2 | + | |
22 | 69 | 21 | 35 | 27 | 6 | 5 | 5 | 4 | ST69 Cplx | B2 | − | |
24 | 131 | 53 | 40 | 47 | 13 | 36 | 472 | 29 | ST131 Cplx | B2 | + | |
28 | 131 | 53 | 40 | 47 | 13 | 36 | 28 | 29 | ST131 Cplx | B2 | + | + |
39 | 131 | 53 | 40 | 47 | 13 | 36 | 28 | 29 | ST131 Cplx | B2 | + | |
53 | 1722 | 101 | 4 | 97 | 29 | 70 | 158 | 2 | None | B2 | − | |
88 | 141 | 13 | 52 | 10 | 14 | 17 | 25 | 17 | None | B2 | − | |
95 | 131 | 53 | 40 | 47 | 13 | 36 | 28 | 29 | ST131 Cplx | B2 | + | |
96 | 1722 | 101 | 4 | 97 | 29 | 70 | 158 | 2 | None | B2 | − | |
99 | 88 | 518 | 4 | 12 | 1 | 20 | 12 | 7 | ST23 Cplx | B2 | + | |
100 | 131 | 53 | 40 | 25 | 13 | 36 | 28 | 29 | ST131 Cplx | B2 | + | |
101 | 998 | 13 | 52 | 156 | 14 | 17 | 25 | 17 | None | B2 | + | |
103 | 131 | 53 | 40 | 47 | 13 | 36 | 28 | 29 | ST131 Cplx | B2 | + | + |
Notes.
- ESBL
- Extended-Spectrum β-lactamase
- O25
- O25 serotype of ExPEC
- ST
- sequence type