Table 4.
QTNs associated with NN via mrMLM in the SBL population.
| QTN | Chr | SNP | Allele | MAF | Position (bp) | QTN effect | LOD score | R2 | Known QTL |
|---|---|---|---|---|---|---|---|---|---|
| qNN1-2-1 | 2 | Gm02_5017572 | G/A | 0.48 | 5017572 | 0.25 | 7.62 | 0.07 | |
| qNN1-4-1a | 4 | Gm04_46680158 | T/C | 0.10 | 46680158 | -0.37 | 7.84 | 0.05 | |
| qNN1-5-1 | 5 | Gm05_27229418 | A/G | 0.32 | 27229418 | 0.22 | 3.62 | 0.04 | |
| qNN1-6-1 | 6 | Gm06_43710729 | G/A | 0.27 | 43710729 | -0.26 | 3.90 | 0.05 | 1-3,1-4,2-1 |
| qNN1-10-1b | 10 | Gm10_44346474 | A/T | 0.41 | 44346474 | 0.27 | 8.56 | 0.07 | E2 |
| qNN1-10-2 | 10 | Gm10_45479097 | C/T | 0.11 | 45479097 | -0.42 | 6.69 | 0.07 | |
| qNN1-14-1 | 14 | Gm14_1243675 | A/G | 0.21 | 1243675 | 0.20 | 4.48 | 0.03 | |
| qNN1-15-1 | 15 | Gm15_7957092 | T/G | 0.31 | 7957092 | -0.25 | 5.99 | 0.06 | |
| qNN1-17-1 | 17 | Gm17_38445432 | T/G | 0.23 | 38445432 | 0.18 | 3.93 | 0.02 | |
| qNN1-17-2 | 17 | Gm17_38559614 | T/C | 0.07 | 38559614 | -0.28 | 3.24 | 0.02 | |
| qNN1-19-1 | 19 | Gm19_2487047 | C/T | 0.11 | 2487047 | -0.27 | 3.60 | 0.03 | |
| qNN2-4-2 | 4 | Gm04_9024569 | T/C | 0.39 | 9024569 | 0.16 | 8.26 | 0.07 | 5-1 |
| qNN2-6-2 | 6 | Gm06_14119587 | C/T | 0.06 | 14119587 | 0.18 | 3.28 | 0.02 | 7-2 |
| qNN2-6-3 | 6 | Gm06_17601986 | C/A | 0.18 | 17601986 | -0.18 | 6.57 | 0.06 | 7-2 |
| qNN2-6-4 | 6 | Gm06_41843359 | C/A | 0.45 | 41843359 | -0.09 | 3.02 | 0.02 | 1-3,1-4,2-1 |
| qNN2-8-1 | 8 | Gm08_18313651 | T/A | 0.17 | 18313651 | 0.13 | 4.01 | 0.03 | |
| qNN2-10-3 | 10 | Gm10_4827909 | G/A | 0.08 | 4827909 | -0.16 | 4.01 | 0.03 | |
| qNN2-10-1 | 10 | Gm10_44378814 | T/C | 0.41 | 44378814 | 0.12 | 4.39 | 0.04 | E2 |
| qNN2-12-1 | 12 | Gm12_8229718 | C/T | 0.23 | 8229718 | 0.11 | 3.08 | 0.02 | |
| qNN2-13-1 | 13 | Gm13_7126248 | C/A | 0.42 | 7126248 | 0.13 | 6.71 | 0.05 | 1-6 |
| qNN2-13-3 | 13 | Gm13_38510582 | T/G | 0.13 | 38510582 | 0.14 | 3.73 | 0.02 | |
| qNN2-14-1 | 14 | Gm14_1243675 | A/G | 0.21 | 1243675 | 0.12 | 3.99 | 0.03 | |
| qNN2-14-2 | 14 | Gm14_1557061 | C/T | 0.20 | 1557061 | 0.12 | 3.06 | 0.03 | |
| qNN2-18-1 | 18 | Gm18_8519411 | C/T | 0.34 | 8519411 | 0.16 | 6.78 | 0.07 | |
| qNN2-19-2 | 19 | Gm19_45415096 | C/A | 0.20 | 45415096 | 0.15 | 4.77 | 0.04 | |
| qNN2-20-1 | 20 | Gm20_40247542 | G/A | 0.32 | 40247542 | 0.09 | 3.24 | 0.02 | |
| qNN3-6-5 | 6 | Gm06_50072605 | A/G | 0.46 | 50072605 | 0.05 | 5.68 | 0.04 | 1-3 |
| qNN3-10-1 | 10 | Gm10_44346474 | A/T | 0.41 | 44346474 | 0.09 | 11.42 | 0.11 | E2 |
| qNN3-11-1 | 11 | Gm11_8556480 | G/A | 0.22 | 8556480 | -0.08 | 6.94 | 0.06 | 3-3,3-4,3-5,3-6 |
| qNN3-13-2 | 13 | Gm13_6859748 | A/G | 0.46 | 6859748 | 0.05 | 5.09 | 0.03 | 1-6 |
| qNN3-13-3 | 13 | Gm13_38510582 | T/G | 0.13 | 38510582 | 0.08 | 4.30 | 0.03 | |
| qNN3-14-3 | 14 | Gm14_11281151 | T/C | 0.40 | 11281151 | 0.08 | 7.22 | 0.08 | |
| qNN3-16-1 | 16 | Gm16_27302091 | A/T | 0.18 | 27302091 | 0.06 | 4.28 | 0.03 | |
| qNN3-19-3 | 19 | Gm19_44938780 | C/T | 0.35 | 44938780 | -0.09 | 9.66 | 0.09 | Dt1 |
aThe QTNs identified for NN at the same stage by both methods are underlined in Table. bThe QTNs identified for NN at least two stages are displayed in bold in Table.