Table 5.
GDT loss predicted by SAAP-QA for the CASP12 blind test set of stage 2 models of 17 target full length strutures.
| Stage 2 (150 Models) - Full Length Protein | ||||
|---|---|---|---|---|
| Targets | Best GDT | Top10 GDT Loss | Top 5 GDT Loss | Top 1 GDT Loss |
| T0893 | 61.98 | 0.52 | 0.52 | 4.86 |
| T0895 | 72.92 | 0.00 | 0.00 | 0.00 |
| T0902 | 50.75 | 2.42 | 2.92 | 3.17 |
| T0906 | 91.90 | 1.05 | 1.96 | 4.05 |
| T0910 | 87.91 | 3.28 | 3.81 | 5.15 |
| T0911 | 65.99 | 0.74 | 3.98 | 6.62 |
| T0912 | 47.79 | 5.47 | 5.47 | 6.05 |
| T0913 | 66.57 | 0.37 | 0.37 | 5.55 |
| T0917 | 84.18 | 4.90 | 4.90 | 4.90 |
| T0920 | 50.42 | 4.45 | 4.45 | 8.29 |
| T0921 | 70.65 | 0.18 | 0.18 | 0.18 |
| T0928 | 63.27 | 0.59 | 0.59 | 11.44 |
| T0943 | 60.61 | 8.55 | 8.94 | 14.10 |
| T0944 | 74.11 | 1.19 | 3.36 | 12.85 |
| T0946 | 45.21 | 0.00 | 0.09 | 2.41 |
| T0947 | 66.43 | 2.00 | 8.57 | 8.57 |
| T0948 | 76.68 | 3.02 | 3.02 | 5.21 |
| Average GDT Loss | 2.28 | 3.12 | 6.08 | |
GDT loss corresponding to the difference between the best model available in the pool of decoys and the model captured by SAAP-QA, are listed for top 10, top 5 and top 1 category models. These full protein targets correspond to the 18 target domains listed in Table 3.