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. 2001 Nov 20;98(24):13860–13865. doi: 10.1073/pnas.241524898

Figure 3.

Figure 3

Association of junction sites with predicted secondary structure of the S region. Sμ side ends (arrowheads) of three pairs of upstream (U) and downstream (D) junctions (clone nos. 209, 216, and 236 in Fig. 2) are mapped on three possible structures of the Sμ region predicted by MFOLD software (bioinfo.math.rpi.edu/∼mfold/dna/) under the different conditions indicated. The temperature parameter was set at 37°C. A and B mark nucleotides 670 and 1070, respectively, of the nontemplate strand of the Sμ sequence.