Table 2.
GC bias
|
Transition bias
|
RGYW/ WRCY bias
|
||||
---|---|---|---|---|---|---|
A/T | G/C | Transversion | Transition | Motif | Nonmotif | |
Observed | 7 | 35 | 14 | 28 | 32 | 10 |
Expected | 17 | 25 | 28 | 14 | 24 | 18 |
Significance | P = 0.030 | P = 0.0023 | P = 0.055 |
Forty-two mutations are classified according to their targeted nucleotide (A/T or G/C), pattern (transversion or transition), and surrounding nucleotides (RGYW/WRCY hot spot motif or not). Expected values were calculated according to average frequency of G/C (60.5%), the hot spot motifs (56.5%) in Sμ and Sα regions. When mutations occur randomly, transversion occurs twice more frequently than transition. Statistical analysis was done by Fisher's exact probability test or χ2 test.