FIGURE 2.

Gene curation scheme for the transcriptional and proteomic datasets. The transcriptional dataset (left) was curated using SAM analysis (false discovery rate = 0.01) before being subjected to biological significance thresholds based on the log₂FC and Δlog₂FC. The proteomic dataset (right) was similarly filtered. First, host cellular proteins were chosen, then, only proteins that passed the log₂FC-, Δlog₂FC-based significance thresholds were selected. The resulting lists of 3,977 and 3,081 unique genes curated from the transcriptional and proteomic datasets, respectively, were used for gene ontological analysis.