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. 2018 May 21;4(7):e000178. doi: 10.1099/mgen.0.000178

Table 2. S. grimesii BXF1 genome main features.

Genome G+C (mol%) CDS tRNA tmRNA GI Phage Secreted proteins*
52.8 4696 78 1 1 4 73
Functional annotation EIF GIF CHM AAM CP MCV EM NM GBM MOA LM XBM MTP BSM OS UNC
860 657 328 313 297 194 159 127 86 86 86 60 42 43 34 514
CAZymes GH GT CBM CE AA PL
378 361 74 60 55 0
merops protease A C I M N P S T U
3 28 11 66 2 2 68 6 7
Transcription factors TF TCS ODP
406 72 21
Secretion systems SecTat I (prsDEF) II III IV V VI
+ + nf nf nf nf nf
antiSMASH NRPS PKS Bacteriocin Siderophore Arylpolyene other
3 1 1 1 1 1

GI, Genomic island; EIF, environmental information processing; GIF, genetic information processing; CHM, carbohydrate metabolism; AAM, amino acid metabolism; CP, cellular processes; MCV, metabolism of cofactors and vitamins; EM, energy metabolism; NM, nucleotide metabolism; GBM, glycan biosynthesis and metabolism; MOA, metabolism of other amino acids; LM, lipid metabolism; XBM, xenobiotic biodegradation and metabolism; MTP, metabolism of terpenoids and polyketides; BSM, biosynthesis of other secondary metabolites; OS, organismal systems; UNC, unclassified; GH, glycoside hydrolase; GT, glycosyl transferase; CBM, carbohydrate-binding module; CE, carbohydrate esterase; AA, auxiliary activity; PL, polysaccharide lyase; A, aspartic; C, cysteine; I, inhibitor; M, metallo; N, asparagine; P, mixed; S, serine; T, threonine; U, unknown; TF, transcription factor; TCS, two-component system; ODP, other DNA-binding protein; NRPS, non-ribosomal polyketide synthase; PKS, polyketide synthase; nf, not found.

*Predicted in EffectiveDB.