Table 2. S. grimesii BXF1 genome main features.
Genome | G+C (mol%) | CDS | tRNA | tmRNA | GI | Phage | Secreted proteins* | |||||||||
52.8 | 4696 | 78 | 1 | 1 | 4 | 73 | ||||||||||
Functional annotation | EIF | GIF | CHM | AAM | CP | MCV | EM | NM | GBM | MOA | LM | XBM | MTP | BSM | OS | UNC |
860 | 657 | 328 | 313 | 297 | 194 | 159 | 127 | 86 | 86 | 86 | 60 | 42 | 43 | 34 | 514 | |
CAZymes | GH | GT | CBM | CE | AA | PL | ||||||||||
378 | 361 | 74 | 60 | 55 | 0 | |||||||||||
merops protease | A | C | I | M | N | P | S | T | U | |||||||
3 | 28 | 11 | 66 | 2 | 2 | 68 | 6 | 7 | ||||||||
Transcription factors | TF | TCS | ODP | |||||||||||||
406 | 72 | 21 | ||||||||||||||
Secretion systems | SecTat | I (prsDEF) | II | III | IV | V | VI | |||||||||
+ | + | nf | nf | nf | nf | nf | ||||||||||
antiSMASH | NRPS | PKS | Bacteriocin | Siderophore | Arylpolyene | other | ||||||||||
3 | 1 | 1 | 1 | 1 | 1 |
GI, Genomic island; EIF, environmental information processing; GIF, genetic information processing; CHM, carbohydrate metabolism; AAM, amino acid metabolism; CP, cellular processes; MCV, metabolism of cofactors and vitamins; EM, energy metabolism; NM, nucleotide metabolism; GBM, glycan biosynthesis and metabolism; MOA, metabolism of other amino acids; LM, lipid metabolism; XBM, xenobiotic biodegradation and metabolism; MTP, metabolism of terpenoids and polyketides; BSM, biosynthesis of other secondary metabolites; OS, organismal systems; UNC, unclassified; GH, glycoside hydrolase; GT, glycosyl transferase; CBM, carbohydrate-binding module; CE, carbohydrate esterase; AA, auxiliary activity; PL, polysaccharide lyase; A, aspartic; C, cysteine; I, inhibitor; M, metallo; N, asparagine; P, mixed; S, serine; T, threonine; U, unknown; TF, transcription factor; TCS, two-component system; ODP, other DNA-binding protein; NRPS, non-ribosomal polyketide synthase; PKS, polyketide synthase; nf, not found.
*Predicted in EffectiveDB.