. Author manuscript; available in PMC: 2018 Aug 29.

Published in final edited form as: Ann Appl Stat. 2018 Mar 9;12(1):609–632. doi: 10.1214/17-AOAS1110

Table 2.

Correlation between the estimated proportions of a cell type k in bulk samples, (W_kj)_j, and the normalized expression levels (X_ij/R_j)_j of its marker gene i in bulk samples. For genes marking both AP and BP, the sum of proportions is used

Gene	Marked cell type	URSM	Cibersort	DSA	ssNMF
HES1	AP	0.73	0.62	0.80	0.68
HES6	BP	0.66	0.58	0.53	−0.72
PAX6	AP.BP	0.91	0.80	0.80	0.61
GLI3	AP.BP	0.90	0.80	0.83	0.54
NEUROD6	N	0.28	0.37	0.02	−0.36
BCL11B	N	0.45	0.57	0.23	0.02
MYT1L	N	0.44	0.37	0.32	0.80