Table 2.

Intrinsic brain mitochondrial proteins and their ubiquitination sites.

UniProt ID	Protein Name	Gene Name	Sequence	Ubiquitination	Oxidized Residue	Confidence, %
O08749	Dihydrolipoyl-dehydrogenase, mitochondrial	Dld	IPVNNRFQTKSTDR	K446		98.99
P29758	Ornithine aminotransferase, mitochondrial	Oat	LFNYNKVLPMNTGVEAGETACK	K135	M139	93.59
Q14DH7	Acyl-CoA synthetase short-chain family member 3, mitochondrial	Acss3	TPPPGQAGK	K472		89.51
Q8CHT0	Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial	Aldh4a1	NESVGYYVEPCIIESKDPQEPIMK	K437		95.86
Q9CZU4 *	GTPase Era, mitochondrial	Eral1	LNPQVLQCLTKFSQVPSILVLN	K225		93.35
Q9WUM5	Succinate-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial	Suclg1	KAKPVVSFIAGITAPPGR	K280		100.00
P05202	Aspartate aminotransferase, mitochondrial	Got2	GINVCLCQSYAKNMGLYGER	K279		93.83
P47791	Glutathione reductase, mitochondrial	Gsr	RDAYVSRLNTIYQNNLTK	K141		92.89
P35700	Peroxiredoxin-1	Prdx1	GSDTIKPDVNK	K185		99.48

Notes: *—long chain ubiquitination tag (LRGG).