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. 2018 Jul 27;9(8):379. doi: 10.3390/genes9080379

Figure 2.

Figure 2

Phylogeny of a selected 46 Sinorhizobium/Ensifer strains with a publicly available whole genome sequence. An unrooted RAxML maximum likelihood phylogeny of 46 Sinorhizobium/Ensifer strains was prepared on the basis of the concatenated nucleotide alignments of 1652 core genes. The presented tree is the bootstrap best tree following 50 bootstrap replicates, and the scale represents the mean number of nucleotide substitutions per site. Nodes with 100% bootstrap support are indicated by the black circles. The colors and numbers to the right of the tree are used to indicate strains that group into putative species on the basis of average nucleotide identity (>96% ANI; same results were obtained with >94% ANI) and average amino acid identity (>96% AAI), as described in the Materials and Methods. Type strains are indicated by the ‘T’. The accessions for all strains included in this figure are provided in Table S1.