Table 2.

Gene members in different modules/colors.

Module	Autophagy	Epithelial to Mesenchymal Transition	Phosphatidylethanolamine Binding
blue	ABL1, ANXA7, ARSB, BNIP1, VPS51, CLTC, DAP, FOXO1, HMGB1, IFI16, NPC1, S100A8, S100A9, STK11, TMBIM6, TP53, UVRAG, SRPX, BECN1, USP10, ULK2, PLEKHM1, TECPR2, HDAC6, OPTN, RNF41, RGS19, ATG7, TM9SF1, WDR45, PARK7, VPS13A, VPS39, ULK3, PTPN22, TMEM208, NRBF2, RAB39A, FNBP1L, WIPI1, MAP1S, DRAM1, SUPT20H, VPS11, TIGAR, VPS18, PHF23, MAP1LC3B, VMP1, C19orf12, ATG10, EVA1A, WDR24, ATG4C, TRIM5, LRSAM1, RAB39B, LRRK2, DRAM2, SMCR8	BMP2, BMP7, FGFR2, FOXF2, HNRNPAB, RBPJ, LOXL2, S100A4, SNAI2, TGFB1, TGFB2, TGFBR3, WNT5A, DLG5, NOG, DDX17, LEF1, EPB41L5, FAM83D, LOXL3, RFLNB	ANXA11, MFGE8, PLTP, PEMT, CD300A, MAP1LC3A
brown	CTSD, RAB8A, TBC1D25, PIK3C3, PIK3CB, RAB1A, VCP, TFEB, ULK1, SQSTM1, HAP1, ATG5, NAPSA, RUBCN, TBC1D5, SIRT2, ATG4B, TECPR1, CHMP2B, VPS41, TRIM17, TOLLIP, ZKSCAN3, CHMP4B, RAB12, C9orf72	AMELX, CTNNB1, HGF, HIF1A, SNAI1, SOX9, TGFBR1, HMGA2	NF1, PEBP1, ESYT2
yellow	ITGB4, PGC, USP13, TMEM59, RB1CC1, GABARAPL2, CLEC16A, UBQLN2, SH3GLB1, WDR41, VTI1A	GSK3B, NOTCH1, WNT11, CUL7, WNT4