Figure 5.

Total number of unique, non-repeat-associated covariance models (CMs) that hit in different genomic intervals. Only CMs with more than two hits were taken into account. Out of 1444 CMs with at least two hits, we observed that only 27 are found among all genomic intervals. Three-hundred-sixteen CMs hit intergenic and intronic regions, while 168 and 93 CMs hit only intergenic or intronic regions, respectively. Eighty-two models exclusively hit short noncoding RNAs (sncRNAs), and a combined 151 models hit sncRNAs and intergenic or intronic or both. Out of all CMs, only 3, 20, and 6 are found exclusively in the 5’-UTR, CDS, and 3’-UTR, respectively. In addition, we found that many CMs give hits in a multitude of different genomic contexts. lncRNA: long non-coding RNA.