Table 1.
Enrichment/ depletion of high-confidence RNAz loci in annotated repeats for the repeat classes defined by RepeatMasker/ RepBase. Enrichments are measured in nucleotides covered by RNAz loci in the repeat class, relative to the total length of the repeat class covered by input alignments.
| Repeat Class | Enrichment | # Hits Overlapping This Repeat | Coverage |
|---|---|---|---|
| LINE | 0.91 | 16,736 | 0.0093 |
| Low | 1.07 | 3031 | 0.0110 |
| Other | 1.21 | 648 | 0.0124 |
| DNA | 1.36 | 3275 | 0.0139 |
| rRNA | 1.42 | 18 | 0.0145 |
| scRNA | 1.52 | 97 | 0.0156 |
| LTR | 1.78 | 26,720 | 0.0183 |
| Unknown | 1.85 | 256 | 0.0190 |
| SINE | 1.93 | 31,777 | 0.0197 |
| tRNA | 3.12 | 99 | 0.0320 |
| snRNA | 3.64 | 55 | 0.0373 |
| Simple | 5.49 | 24,228 | 0.0563 |
| Satellite | 6.53 | 2264 | 0.0670 |