Table 1.
List of genes differentially regulated in human monocyte-derived dendritic cells (moDCs) infected with modified vaccinia virus Ankara (MVA)-hepatitis C virus (HCV) ∆C6L in comparison with MVA-HCV. a The gene name and the probe ID are indicated. b Differentially expressed genes were evaluated by the non-parametric algorithm “Rank Products” available as “RankProd” package at Bioconductor, and the genes were filtered using a p value Limma < 0.05 and a fold change of ≥2 or ≤−2.
| Gene Name (Probe identity (ID)) a | Accession Number | Fold Change b |
|---|---|---|
| Transmembrane protein 11 (TMEM11) | NM_003876 | +2.05 |
| KIAA0586 (KIAA0586) | NM_014749 | +2.00 |
| CD28 molecule (CD28) | NM_006139 | −2.00 |
| FLJ30313 (lnc-GATA5-2) | lnc-GATA5-2:2 | −2.01 |
| Aquaporin 1 (AQP1) | NM_198098 | −2.03 |
| Gessler Wilms tumor Homo sapiens (SMCR2) | AI821758 | −2.05 |
| Oogenesis homeobox (NOBOX) | NM_001080413 | −2.05 |
| RAS oncogene family (RAB6A) | NM_002869 | −2.08 |
| Ribosomal protein S28 (RPS28) | NM_001031 | −2.08 |
| Major histocompatibility complex, class II, DR beta 5 (HLA-DRB5) | NM_002125 | −2.09 |
| Chimerin 2 (ENST00000409922) | ENST00000409922 | −2.10 |
| Nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1 (NFATC1) | NM_172390 | −2.13 |
| RAS guanyl releasing protein 2 (RASGRP2) | ENST00000377494 | −2.14 |
| Glycosyltransferase 3 family (UGT3A1) | NM_152404 | −2.16 |
| Myotubularin related protein 3 (MTMR3) | NM_021090 | −2.17 |
| Keratin associated protein 2-1 (KRTAP2-1) | NM_001123387 | −2.18 |
| keratin associated protein 5-4 (KRTAP5-4) | NM_001012709 | −2.19 |
| G protein-coupled receptor 88 (GPR88) | NM_022049 | −2.19 |
| G protein pathway suppressor 2 pseudogene (ENST00000430745) | ENST00000430745 | −2.19 |
| Secretory trafficking family member B (MON1B) | NM_014940 | −2.21 |
| Solute carrier family 16, member 11 (SLC16A11) | NM_153357 | −2.24 |
| Vacuolar protein sorting 18 homolog (VPS18) | NM_020857 | −2.26 |
| Synapse defective 1, Rho GTPase, homolog 2 (SYDE2) | NM_032184 | −2.27 |
| Neuron-derived neurotrophic factor (NDNF) | NM_024574 | −2.30 |
| Homeobox 1 (EMX1) | BC037242 | −2.32 |
| Actin-like protein 3 (THC2499666) | THC2499666 | −2.32 |
| Interleukin 15 receptor (IL15RA) | ENST00000379971 | −2.39 |
| Chemokine (C-C motif) ligand 18 (CCL18) | NM_002988 | −2.40 |
| cDNA clone NT2RI2025693 (ENST00000587777) | ENST00000587777 | −2.42 |
| Cellular repressor of E1A-stimulated genes 1 (CREG1) | NM_003851 | −2.46 |
| NYN domain and retroviral integrase containing (NYNRIN) | NM_025081 | −2.49 |
| Uncoupling protein 3 (UCP3) | NM_022803 | −2.53 |
| Phospholipase C (PLCH2) | NM_014638 | −2.57 |
| Long intergenic non-protein coding RNA 687 (LINC00687) | NR_110635 | −3.05 |
| Synuclein, beta (SNCB) | NM_001001502 | −3.05 |
| Arylformamidase (AFMID) | NM_001145526 | −3.20 |