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Phylogenetic tree based on core genome single nucleotide polymorphism (SNP)-typing of typical M. plutonius strains. The phylogenetic tree was obtained via the Harvest software suite [33]. M. plutonius 49.3 was set as the reference strain. The strains are marked in the same color code used in Figure 2. The SNP and Indel positions, in relation to the reference, are shown on the right hand side as violet lines. Sequence types are shown as well for comparison purposes.
