Table 2.

De novo discoveries.

Virus	Genus	Family	Host	Reference
Actinidia chlorotic ringspot-associated virus	Emaravirus	Fimoviridae	Actinidia	Zheng et al. [89]
Actinidia seed-borne latent virus	Prunevirus	Betaflexiviridae		Veerakone et al. [90]
Apple-associated luteovirus	Luteovirus	Luteoviridae	apple	Shen et al. [84]
Apple geminivirus	Geminivirus	Geminiviridae		Liang et al. [34]
Apple necrotic mosaic virus	Ilarvirus	Bromoviridae		Liang et al. [34]
Apple rubbery wood virus 1	(?)	Phenuiviridae		Rott et al. [83]
Apple rubbery wood virus 2	(?)	Phenuiviridae		Rott et al. [83]
Citrus concave gum-associated virus	Phlebovirus(?)	Phenuiviridae	Citrus	Navarro et al. [68]
Citrus jingmen-like virus	Flavivirus	Flaviviridae		Matsumura et al. [69]
Citrus leprosis virus-N	Dichoravirus	Rhabdoviridae		Roy et al. [65]
Citrus leprosis virus-C2	Cilevirus			Roy et al. [63]
Citrus yellow vein clearing virus	Mandarivirus	Alphaflexiviridae		Loconsole et al. [61]
Citrus vein enation virus	Enamovirus	Luteoviridae		Vives et al. [62]
Citrus virga-like virus	Virgavirus	Virgaviridae		Matsumura et al. [69]
Citrus chlorotic dwarf-associated virus	Geminivirus	Geminiviridae		Loconsole et al. [52]
Cherry Rusty Mottle-associated virus	Robigovirus	Betaflexiviridae	cherry	Villamor et al. [75]
Cherry Twisted Leaf-associated virus	Robigovirus	Betaflexiviridae		Villamor et al. [75]
Prunus virus F	Fabavirus	Secoviridae		Villamor et al. [49]
Cherry virus F	Fabavirus	Secoviridae	sweet cherry, sour cherry	Koloniuk et al. [40]
Mulberry mosaic dwarf-associated virus	(?)	Geminiviridae	mulberry	Ma et al. [87]
Mulberry badnavirus 1	Badnavirus	Caulimoviridae	mulberry	Chiumenti et al. [35]
Nectarine stem pitting-associated virus	Luteovirus	Luteoviridae	peach	Bag et al. [73]
Nectarine virus M	Marafivirus	Tymoviridae		Villamor et al. [74]
Peach leaf pitting-associated virus	Fabavirus	Secoviridae		He et al. [38]
Peach virus D	Marafivirus	Tymoviridae		Igori et al. [77]
Persimmon cryptic virus	Deltapartitivirus	Partitiviridae	persimmon	Morelli et al. [86]
Persimmon virus A	Cytorhabdovirus	Rhabdoviridae		Ito et al. [85]
Apricot vein clearing associated virus	Prunevirus	Betaflexiviridae	Prunus	Elbeaino et al. [44]
Caucasus prunus virus	Prunevirus	Betaflexiviridae		Marais et al. [70]
Cherry-associated luteovirus	Luteovirus	Luteoviridae		Lenz et al. [48]
Mume virus A	Capillovirus	Betaflexiviridae		Marais et al. [71]
Prunus virus T	Tepovirus	Betaflexiviridae		Marais et al. [45]

?: putatively belongs to a new virus genus.