Table 2.
Evaluation of the improved cgMLST scheme constructed from the 45 isolates representing the phylogenetic diversity of the Mtbc.
| Number of strains | Perc. mean1 | Perc. min1 | Perc. max1 | |
|---|---|---|---|---|
| Lineage 1 | 35 | 98.4 | 97.4 | 98.7 |
| Lineage 2 | 71 | 98.6 | 98.0 | 98.8 |
| Lineage 3 | 28 | 98.9 | 98.5 | 99.1 |
| Lineage 4 | 74 | 99.5 | 98.0 | 99.8 |
| Lineage 5 | 14 | 98.2 | 98.0 | 98.4 |
| Lineage 6 | 15 | 98.3 | 98.1 | 98.5 |
| Lineage 7 | 2 | 98.3 | 98.2 | 98.3 |
| Canettii | 2 | 97.8 | 97.7 | 97.9 |
| Animal⁎ | 10 | 97.8 | 97.4 | 98.3 |
| total | 251 | 98.8 | 97.4 | 99.8 |
1
Percentage of cgMLST genes fulfilling quality criteria, given as mean, minimum, and maximum value.
⁎
Including M. caprae, M. bovis, M. orygis, M. microti, and M. pinnipedii.