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. 2018 Jul 16;210(1):137–153. doi: 10.1534/genetics.118.301261

Table 3. Oligonucleotides used in this study.

Oligonucleotide Sequence (5′–3′) Specificity
KO-4490-5fw gtaacgccagggttttcccagtcacgacggaa SmKin3 5′ flank with
ttccttccccatcgcgctaccaggtaca pRS426 overlap
KO-4490-5rv cgagggcaaaggaatagggttccgttgaggct SmKin3 5′ flank with
tttggttacagaagggtgattgt hph overlap
KO-4490-3fw gcccaaaaatgctccttcaatatcagttgctgag hph with SmKin3 3′ flank
gtgatgaatggtgaagagaag overlap
KO-4490-3rv gcggataacaatttcacacaggaaacagcgaatt SmKin3 3′ flank with
cctgttttggttactgtaacagccgt pRS426 overlap
SmKin3_F atggccgacgaaggagtcgc SmKin3 start
SmKin3_R ctaagatccggcaacagccc SmKin3 end
kin3- 5-2DR aaccgtgtacttcgattggc SmKin3 5′ flank
kin3-3-DR2 aagcttgatcgccatggca SmKin3 3′ flank
hph1MN cgatggctgtgtagaagtactcgc hph
hph2MN atccgcctggacgactaaaccaa hph
5′na4490-fw gacggtatcgataagcttgatatcgggtcctcaacggcgcacttg pRS426, SmKin3 5′ UTR
3′na4490-rv cggccgctctagaactagtgcaacgtaggta SmKin33′ UTR, pRS426
tgtacgtagctgc
Pgpd-mrfp-fw catcgcagcttgactaacagctacatggcctcctccgaggacgtcatc gpd(p), mrfp
mrfp-kin3-rv gtcggccatagaaccaccaccaccggcgccg mrpf, SmKin3
gtggagtggcg
mrfp-kin3-fw cggcgccggtggtggtggttctatggccgacgaaggagtcgccaac mrpf, SmKin3
kin3-Ttrpc-rv gtggatccactagttctagactaagatccggc SmKin3, trpc(t)
aacagccccccaccg
kin3K26R-Q5-fw cgtttacaggggaattgacagg SmKin3 K26 codon
kin3K26R-Q5-rv acaccaaaactgcctcctgtg SmKin3 K26 codon
kin3K39R-Q5-2fw gtggccatcagacatgtacg SmKin3 K39 codon
kin3K39R-Q5-2rv tgtttcgcccgttgtcctg SmKin3 K39 codon
pro11mut-fw cgtatgggaaagaggaaggg pro11 before pro11 mutation
pro11mut-rv cggggccttgtgtttgatc pro11 after pro11 mutation
pro11-21 aagcgcgcttgccagtcgctgc pro11 5′ flank
pro11-kor acgatcagcctcggaaagaccgc pro11 3′ flank
pro22-ClaI-for gcggggtttttcagtatctacgattcatctgcagctaaccaaacattgag pro22 gene
atcaaccccag
pro22-SacI-rv cctccctagcgatgaggatgatgacatggtaaccattattggacctcaag pro22 gene
accacgtg
pro22vp1 ccaagttcagcaacaagaggatgg pro22 5′ flank
pro22vp2 cttacggtagctacaacccgtaca pro22 3′ flank