Table 2. Comparison of estimated allele substitution effects from different analyses with estimates from the joint statistical analysis using single phenotype records in scenarios with low and high diversity (values are averages across the five replicates).
| Analysisa | Low diversity | High diversity | ||
|---|---|---|---|---|
| Correlation | Regression | Correlation | Regression | |
| Separate A | 0.71 | 1.09 | 0.65 | 1.10 |
| Separate B | 0.71 | 1.09 | 0.65 | 1.10 |
| Separate C | 0.71 | 1.09 | 0.65 | 1.11 |
| Separate D | 0.71 | 1.09 | 0.64 | 1.10 |
| PEC | 1.00 | 1.00 | 1.00 | 1.00 |
| PECwithin chromosome | 0.99 | 0.98 | 0.97 | 0.95 |
| PEV | 0.96 | 0.80 | 0.96 | 0.89 |
| LDtraining | 1.00 | 1.00 | 0.98 | 0.97 |
| LDvalidation | 0.96 | 0.88 | 0.93 | 0.84 |
a
SE are between 0.00 and 0.01.