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. Author manuscript; available in PMC: 2019 Sep 1.
Published in final edited form as: Genes Chromosomes Cancer. 2018 Jul 30;57(9):459–470. doi: 10.1002/gcc.5

Figure 1. Flow diagram for CNVDetect detection algorithm.

Figure 1

1A) The BMD SV Pipeline is presented in four stages: Library Protocol, NGS Sequencing, Mapping, and SV Analysis. CNVDetect’s place in the overall pipeline is highlighted in red. 1B) The CNVDetect algorithm proceeds in four stages: Normalization, Segmentation, Classification, and Visualization. It depends on output from the previous stages in the BMD SV Pipeline as well as from the Junction Detection algorithm within SVAtools.