Table 2:
Metrics of the final assemblies of the C. simplicifolius and D. jenkinsiana genomes
| C. simplicifolius | D. jenkinsiana | ||||
|---|---|---|---|---|---|
| Items | Hybrid assemblya | Hi-C assembly | Hybrid assemblya | Hi-C assembly | |
| Contig | Number | 29,973 | 29,973 | 27,631 | 27,631 |
| Size (bp) | 1,923,260,127 | 1,923,260,127 | 1,570,849,893 | 1,570,849,893 | |
| N50 (bp) | 99,304 | 99,304 | 89,562 | 89,562 | |
| N90 (bp) | 28,872 | 28,872 | 25,720 | 25,720 | |
| Scaffold | Number | 29,775 | 5,283 | 27,146 | 5,126 |
| Size (bp) | 1,923,287,712 | 1,935,533,712 | 1,570,878,714 | 1,581,888,714 | |
| N50 (bp) | 99,590 | 160,072,219 | 89,705 | 119,093,744 | |
| N90 (bp) | 28,922 | 93,668,489 | 25,828 | 61,330,142 | |
| Total number | >3 kb | 29,767 | 5,275 | 27,137 | 5,117 |
| >5 kb | 29,727 | 5,235 | 27,081 | 5,061 | |
| Longest sequence (bp) | 877,470 | 219,145,773 | 1,422,351 | 162,635,149 | |
| Shortest sequence (bp) | 1,286 | 1,286 | 719 | 719 | |
| Ratio of ambiguous bases (%) | 0.0 | 0.6 | 0.0 | 0.7 | |
| GC ratio (%) | 41.07 | 41.07 | 41.78 | 41.78 | |
aHybrid assembly means de novo assembly using Illumina and PacBio data in our study.