Table 2. Gene ontology enrichment of gene clusters in Figure 7.
| CLUSTER | CATEGORY | TERM | COUNT | %a | BH PVALb |
|---|---|---|---|---|---|
| TOTAL | |||||
| CLUSTER 1 | GOTERM_BP_DIRECT | GO:0050832∼defense response to fungus | 16 | 7.69 | 1.50E-06 |
| 208 | GOTERM_BP_DIRECT | GO:0042742∼defense response to bacterium | 18 | 8.65 | 2.99E-06 |
| GOTERM_CC_DIRECT | GO:0016021∼integral component of membrane | 72 | 34.62 | 6.94E-05 | |
| GOTERM_BP_DIRECT | GO:0010200∼response to chitin | 11 | 5.29 | 8.34E-05 | |
| GOTERM_CC_DIRECT | GO:0005886∼plasma membrane | 57 | 27.40 | 1.75E-04 | |
| GOTERM_CC_DIRECT | GO:0005576∼extracellular region | 32 | 15.38 | 2.51E-04 | |
| GOTERM_BP_DIRECT | GO:0010112∼regulation of systemic acquired resistance | 5 | 2.40 | 7.60E-04 | |
| GOTERM_BP_DIRECT | GO:0009611∼response to wounding | 12 | 5.77 | 9.69E-04 | |
| KEGG_PATHWAY | ath04626:Plant-pathogen interaction | 9 | 4.33 | 1.13E-03 | |
| GOTERM_BP_DIRECT | GO:0009751∼response to salicylic acid | 10 | 4.81 | 2.43E-03 | |
| GOTERM_BP_DIRECT | GO:0006952∼defense response | 18 | 8.65 | 2.50E-03 | |
| GOTERM_BP_DIRECT | GO:0009753∼response to jasmonic acid | 10 | 4.81 | 2.55E-03 | |
| GOTERM_BP_DIRECT | GO:0009617∼response to bacterium | 8 | 3.85 | 3.21E-03 | |
| GOTERM_MF_DIRECT | GO:0030246∼carbohydrate binding | 11 | 5.29 | 4.38E-03 | |
| GOTERM_BP_DIRECT | GO:0012501∼programmed cell death | 4 | 1.92 | 2.70E-02 | |
| CLUSTER 2 | |||||
| 257 | GOTERM_BP_DIRECT | GO:0009414∼response to water deprivation | 14 | 5.45 | 1.72E-02 |
| KEGG_PATHWAY | ath04075:Plant hormone signal transduction | 9 | 3.50 | 4.09E-02 | |
| CLUSTER 3 | |||||
| 264 | GOTERM_CC_DIRECT | GO:0005576∼extracellular region | 46 | 17.42 | 2.29E-08 |
| GOTERM_MF_DIRECT | GO:0046983∼protein dimerization activity | 17 | 6.44 | 3.72E-07 | |
| GOTERM_MF_DIRECT | GO:0000977∼RNA polymerase II regulatory region sequence-specific DNA binding | 11 | 4.17 | 1.65E-05 | |
| GOTERM_BP_DIRECT | GO:0000165∼MAPK cascade | 8 | 3.03 | 1.10E-04 | |
| GOTERM_BP_DIRECT | GO:0045944∼positive regulation of transcription from RNA polymerase II promoter | 8 | 3.03 | 1.11E-03 | |
| GOTERM_MF_DIRECT | GO:0033946∼xyloglucan-specific endo-beta-1, 4-glucanase activity | 4 | 1.52 | 1.69E-03 | |
| GOTERM_MF_DIRECT | GO:0008794∼arsenate reductase (glutaredoxin) activity | 5 | 1.89 | 1.53E-03 | |
| KEGG_PATHWAY | ath01110:Biosynthesis of secondary metabolites | 23 | 8.71 | 1.25E-02 | |
| GOTERM_MF_DIRECT | GO:0051537∼2 iron, 2 sulfur cluster binding | 7 | 2.65 | 3.16E-03 | |
| GOTERM_MF_DIRECT | GO:0015035∼protein disulfide oxidoreductase activity | 8 | 3.03 | 3.22E-03 | |
| KEGG_PATHWAY | ath00073:Cutin, suberine and wax biosynthesis | 4 | 1.52 | 2.23E-02 | |
| GOTERM_MF_DIRECT | GO:0003700∼transcription factor activity, sequence-specific DNA binding | 30 | 11.36 | 1.21E-02 | |
| CLUSTER 4 | |||||
| 159 | GOTERM_BP_DIRECT | GO:0009753∼response to jasmonic acid | 13 | 8.18 | 9.35E-07 |
| GOTERM_BP_DIRECT | GO:0042742∼defense response to bacterium | 16 | 10.06 | 1.31E-06 | |
| GOTERM_BP_DIRECT | GO:0009617∼response to bacterium | 11 | 6.92 | 1.62E-06 | |
| GOTERM_BP_DIRECT | GO:0006952∼defense response | 20 | 12.58 | 3.13E-06 | |
| GOTERM_BP_DIRECT | GO:0009751∼response to salicylic acid | 9 | 5.66 | 1.76E-03 | |
| GOTERM_BP_DIRECT | GO:0009863∼salicylic acid mediated signaling pathway | 5 | 3.14 | 1.90E-03 | |
| GOTERM_BP_DIRECT | GO:0007165∼signal transduction | 12 | 7.55 | 7.09E-03 | |
| GOTERM_BP_DIRECT | GO:0050832∼defense response to fungus | 9 | 5.66 | 7.76E-03 | |
| GOTERM_BP_DIRECT | GO:0009627∼systemic acquired resistance | 5 | 3.14 | 1.04E-02 | |
| KEGG_PATHWAY | ath01110:Biosynthesis of secondary metabolites | 17 | 10.69 | 1.10E-02 | |
| GOTERM_BP_DIRECT | GO:0055114∼oxidation-reduction process | 21 | 13.21 | 1.13E-02 | |
| GOTERM_BP_DIRECT | GO:0009695∼jasmonic acid biosynthetic process | 4 | 2.52 | 2.24E-02 | |
| GOTERM_BP_DIRECT | GO:0080027∼response to herbivore | 3 | 1.89 | 2.69E-02 | |
| GOTERM_BP_DIRECT | GO:0009611∼response to wounding | 8 | 5.03 | 2.78E-02 | |
| KEGG_PATHWAY | ath00592:alpha-Linolenic acid metabolism | 4 | 2.52 | 2.92E-02 | |
| GOTERM_BP_DIRECT | GO:0002229∼defense response to oomycetes | 4 | 2.52 | 3.13E-02 | |
| GOTERM_CC_DIRECT | GO:0005576∼extracellular region | 23 | 14.47 | 3.74E-02 | |
| GOTERM_BP_DIRECT | GO:0009620∼response to fungus | 5 | 3.14 | 4.44E-02 | |
| CLUSTER 5 | |||||
| 172 | GOTERM_CC_DIRECT | GO:0005576∼extracellular region | 27 | 15.70 | 4.47E-04 |
| KEGG_PATHWAY | ath00940:Phenylpropanoid biosynthesis | 7 | 4.07 | 1.97E-03 | |
| CLUSTER 6 | |||||
| 21 | GOTERM_CC_DIRECT | GO:0005576∼extracellular region | 11 | 52.38 | 9.89E-05 |
| GOTERM_BP_DIRECT | GO:0010584∼pollen exine formation | 3 | 14.29 | 9.12E-03 |
a
Percentage of genes in input that are represented by a given gene ontology.
b
Benjamini-Hochberg-corrected P Value.