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. 2018 Jul 7;10(9):2151–2167. doi: 10.1093/gbe/evy144

Fig. 5.

Fig. 5.

—Bayesian phylogeny of PRD class homeodomain sequences from a selection of bilaterian genomes, and the new unclassified Lopx gene family. Formatting as in figures 1 and 3. A previously reconstructed clade (PRD-III from Paps et al. 2015), which is topologically intact but does not meet the clade definition criteria is indicated with an empty box. Full sequence details are included in supplementary file 1, Sheet 4, Supplementary Material online. The original alignment is presented in supplementary file 9, Supplementary Material online. A full version of the Newick format tree is presented in supplementary file 4, Supplementary Material online. Annelid species: S. lamarcki, Spirobranchus lamarcki; C. teleta, Capitella teleta; H. robusta, Helobdella robusta; P. dumerilii, Platynereis dumerilii. Brachiopod species: L. anatina, Lingula anatina. Mollusc species: C. gigas, Crassostrea gigas; L. gigantea, Lottia gigantea; P. vulgata, Patella vulgata. Insect species: A. mellifera, Apis mellifera; D. melanogaster, Drosophila melanogaster; T. castaneum, Tribolium castaneum. Deuterostome species: B. floridae, Branchiostoma floridae.