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Core genome SNP phylogeny of community-acquired isolates (“CD”) sequenced in this study. Reads from 30 community-acquired C. difficile isolates (CA-CDI) were run through the nullarbor pipeline using C. difficile 630 genome (NC_009089) as the reference and core SNP genome phylogenies were constructed using MrBayes using the 630 reference genome as the outgroup. A NAP-1 like cluster (CD25..CD52) is noted. The bootstrap support values for all branches are 100
