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. 2018 Aug 31;18:443. doi: 10.1186/s12879-018-3337-9

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© The Author(s). 2018

Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 3 — Core genome SNP phylogeny from community-acquired (n = 30) and indeterminate (n = 8) (“CD”), and nosocomial (“N”) C. difficile isolates (n = 33) was constructed as described in Fig. 2 using C. difficile 630 genome (NC_009089) as the reference. This tree was midpoint rooted based on the long genetic distance present between the majority of isolates and four nosocomial isolates (N09, N11, N04, N21). The bootstrap support values for all branches are 100